View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18571_low_1 (Length: 711)
Name: NF18571_low_1
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 164 - 689
Target Start/End: Original strand, 34292330 - 34292852
Alignment:
| Q |
164 |
cattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgacctctttataatcttctccca |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292330 |
cattgtggtttttcccactccgcccatcccacaaatgctaatcatat--tgacttgatcatccttgagtttctctatgacctctttataatcttctccct |
34292427 |
T |
|
| Q |
264 |
agacaataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34292428 |
agacaataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctt-ccttcat |
34292526 |
T |
|
| Q |
364 |
gcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattttttgctattttta |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34292527 |
gcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtcaaccaaagcattttttgctattttta |
34292626 |
T |
|
| Q |
464 |
atactattttcatcagagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttcc |
563 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34292627 |
actctattttcatcagagagccacttttgcaactgatcttcaattgttgtcacatcatagacccatttttgcatattaggtgcaatttcatatcctttcc |
34292726 |
T |
|
| Q |
564 |
ttctttcagtttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgannnnnnngtgttgcgtcaa |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
34292727 |
ttctttcagtttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgatttttttgtgttgtgtcaa |
34292826 |
T |
|
| Q |
664 |
atatttgaaatgcttcatggttgact |
689 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
34292827 |
atatttgaaatgcttcatgattgact |
34292852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 34566729 - 34567148
Alignment:
| Q |
16 |
cctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataattt-atatattgggagacactgccattgcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
34566729 |
cctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataattttatatcttgggagacattgccattgcaa |
34566828 |
T |
|
| Q |
115 |
cttcttcaaatagcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
34566829 |
cttcttcaaatagcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacagatgctaatcatat--tg |
34566926 |
T |
|
| Q |
215 |
acttgatcatccttgagtttctctatgacctctttataatcttctcccaagacaataagctcttgatattttttgtataggtagatccaagtgttaatgg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34566927 |
acttgatcatccttgagtttctctatgacctctttataatcttctccctagacaataagctcttgatattttttgtataggtagatccaagtgttaatgg |
34567026 |
T |
|
| Q |
315 |
aggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataatt |
414 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567027 |
aggtttggggtatgaaataacttgaaatttgttttcttc-ttccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataatt |
34567125 |
T |
|
| Q |
415 |
aaatgctaaatttgagcattgtc |
437 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34567126 |
aaatgctaaatttgagcattgtc |
34567148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 473 - 689
Target Start/End: Original strand, 34567147 - 34567363
Alignment:
| Q |
473 |
tcatcagagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcag |
572 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567147 |
tcatcagagagccacttttgcaactcattttcaattgttgtgacatcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcag |
34567246 |
T |
|
| Q |
573 |
tttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgannnnnnngtgttgcgtcaaatatttgaa |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
34567247 |
tttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgatttttttgtgttgtgtcaaatatttgaa |
34567346 |
T |
|
| Q |
673 |
atgcttcatggttgact |
689 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34567347 |
atgcttcatggttgact |
34567363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 34292228 - 34292313
Alignment:
| Q |
16 |
cctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatattgggagac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292228 |
cctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatattgggagac |
34292313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 34371341 - 34371280
Alignment:
| Q |
145 |
ttttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatc |
206 |
Q |
| |
|
||||||||| ||||||||| | ||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
34371341 |
ttttgatgagttctttcacaagtgtggttttccccactccacccatcccacaaatgccaatc |
34371280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 34555400 - 34555494
Alignment:
| Q |
356 |
tccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattt |
450 |
Q |
| |
|
||||||| ||| |||||| ||||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| || | ||||||||| ||||| |
|
|
| T |
34555400 |
tccttcaaccttataatatattcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacattt |
34555494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 683
Target Start/End: Original strand, 15896412 - 15897070
Alignment:
| Q |
24 |
gctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatattgggagac-actgccattgcaacttcttca |
122 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||| || ||| || || |||||||| ||||||| ||| |
|
|
| T |
15896412 |
gctgtcctttttaaattccatgcccaaagtatcagcaatttgaatttggatcttctcataatttacatcttgagaaaccactgccatcacaacttcatca |
15896511 |
T |
|
| Q |
123 |
aatagcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatc |
222 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
15896512 |
aatagattgtttttttctattgttttgatgacttctttcaccagtgtggtttttcctactccgcccatcccacaaatgctaatcattt--tgacttgatc |
15896609 |
T |
|
| Q |
223 |
atccttgagtttctctatgacctct-ttataatcttctcccaagacaataagctcttgatattttttgtataggtagatccaagtgttaatggaggttta |
321 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| || || | |||||||| |||||||| || |||||| ||||||||||||||||||||| || |||| |
|
|
| T |
15896610 |
atccttgagcttctctatgacctctgttataattttttctctagacaataggctcttgacatcttttgtgaaggtagatccaagtgttaatgaagcttta |
15896709 |
T |
|
| Q |
322 |
gggtatgaaataacttgaaatttgttttcttctttccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgct |
421 |
Q |
| |
|
||||| || ||| ||| ||||||||||| ||| | |||||| ||||||||||| ||| | |||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
15896710 |
gggtaagatatatctttaaatttgtttttttcct-ccttcaggcttgtaatatattctatccttttagttgcttgctttcccaatgagtaattaaatgct |
15896808 |
T |
|
| Q |
422 |
aaatttgagcattgtccaccaaagcattttttgctatttttaatactattttcatcagagagccacttttgcaactgatcttcaattgttgtcacttcat |
521 |
Q |
| |
|
| || ||| |||||||||||||| ||||| || | || |||| | ||||||||| ||||| ||| |||||| ||| || |||||| ||||||| ||| |
|
|
| T |
15896809 |
atatctgaacattgtccaccaaaacatttcttcttcttgttaacattattttcattagagatccatttttgccactcattttcaataattgtcacatcag |
15896908 |
T |
|
| Q |
522 |
agagccatttttgcacattaggtgcaatttcatatcctttccttctttcagtttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaag |
621 |
Q |
| |
|
| |||||||||||||| | ||| ||||||||| ||| |||||||||||| | || ||| ||||||||||||||||||| |||||||| || ||| || |
|
|
| T |
15896909 |
atagccatttttgcacgatgggttcaatttcatgtcccttccttctttcattgtccacctttgtttgcaatgcttgtttcatcatttttaagttcttgag |
15897008 |
T |
|
| Q |
622 |
ttcttcctccaaatttgttgtgannnnnnngtgttgcgtcaaatatttgaaatgcttcatgg |
683 |
Q |
| |
|
|| ||||||| ||| |||| | |||||| ||||||||||| ||||||||||||| |
|
|
| T |
15897009 |
ctcctcctccagattgattgtaatttttttgtgttgtgtcaaatatttaaaatgcttcatgg |
15897070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 129604 - 129548
Alignment:
| Q |
146 |
tttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgct |
202 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
129604 |
tttgatgagttctttaaccaatgtggtttttcccactccacccatcccacatatgct |
129548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University