View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18571_low_10 (Length: 215)
Name: NF18571_low_10
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 23428045 - 23427952
Alignment:
| Q |
5 |
ctaaaaaccaagtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcat |
98 |
Q |
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| T |
23428045 |
ctaaaaaccaagtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcat |
23427952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 17507401 - 17507331
Alignment:
| Q |
28 |
agaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcat |
98 |
Q |
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| T |
17507401 |
agaagcaaacacattaaggcaaaatttcactttattagagaacaagtgaacaaagaaatgtttaaggtcat |
17507331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 1833936 - 1833998
Alignment:
| Q |
15 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaa |
77 |
Q |
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| T |
1833936 |
agtgttgcatgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaa |
1833998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 6211540 - 6211610
Alignment:
| Q |
28 |
agaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcat |
98 |
Q |
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| T |
6211540 |
agaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcat |
6211610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 6240476 - 6240546
Alignment:
| Q |
28 |
agaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcat |
98 |
Q |
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| T |
6240476 |
agaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcat |
6240546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 16943954 - 16943892
Alignment:
| Q |
15 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaa |
77 |
Q |
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| T |
16943954 |
agtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
16943892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 17014619 - 17014557
Alignment:
| Q |
15 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaa |
77 |
Q |
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| T |
17014619 |
agtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
17014557 |
T |
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