View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18571_low_7 (Length: 255)
Name: NF18571_low_7
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5426043 - 5425803
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
5426043 |
cttgatcttagtcatgagtctatttccggaggacttaatgcttcaagttctcttttcagcctgcaatatctgcagagtttgaatttagctttaaatgact |
5425944 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5425943 |
ttcattctatgatgcctcaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacggaaatttt |
5425844 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttcttcat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5425843 |
tcacctcaaaaggttggtcactcttgatttgtcttcttcat |
5425803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5399334 - 5399554
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||| | |
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|
| T |
5399334 |
cttgatcttagtcaagagtctatttccggaggacttaatgattctagtgctcttttcaacctgcaatatctgcagagtctgaatttagctttaaatgttt |
5399433 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
||| | ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |
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|
| T |
5399434 |
ttcgtgctacaattcctcaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacattggctttgaaggacagatccctaaggaaatttt |
5399533 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5399534 |
tcacctcaaaaggttggtcac |
5399554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5352338 - 5352575
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||| || || || ||||||| |
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|
| T |
5352338 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagtgctattttcagcctgcaatatctgcagagtctgaatttggcatttaatgact |
5352437 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
|||||||| |||| ||| |||| ||||| | || | |||||||||||| | ||||| || | ||||||||| | || || |||| | |||||||| |
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|
| T |
5352438 |
ttcattctgtgattcctaaagacttgcataagctgaaaaatttgaggtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttc |
5352537 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttctt |
238 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||| |
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|
| T |
5352538 |
tcaccttacaaggttggttactcttgatttgtcttctt |
5352575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5348723 - 5348483
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||| | ||||||||||||||| |||| || ||||| ||||| | |
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|
| T |
5348723 |
cttgatcttagtcatgagtctatttccggaggacttgacaattcaagtgctcttttcagcttgcaatatctgcagagtctgaatttggcttttaatgatt |
5348624 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
||| |||| |||| ||| |||| | || | || || ||||||| |||| ||||||| ||||| ||||| ||| | ||||||||||||| ||||||| |
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|
| T |
5348623 |
ttcgttctgtgattcctcaagactttgataagctacaaaatttgatgtatctgaacttgtccaatgctggatttaagggacagatccctaaggaaatttc |
5348524 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttcttcat |
241 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5348523 |
tcacctcaaaaggttggtctctcttgatttgtcgtcttcat |
5348483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5410450 - 5410686
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| || ||||| ||| ||| |
|
|
| T |
5410450 |
cttgatcttagtcaagagtctatctccggaggacttaatgattcaagtgctcttttcagcctgcaatatctgcagagtctgaatttggcttttaatcact |
5410549 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
||| |||| |||| || |||| ||||| || || |||||||||||||| ||||| || || || |||||| | |||||| | || ||||||| |
|
|
| T |
5410550 |
ttcgttctgtgattccgcaagacttgcataggctacataatttgaggtatttaaacttgtctaatgccggctttaagggacaggttccggaggaaatttc |
5410649 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttct |
237 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
5410650 |
tcacctcaaaaggttggtcattcttgatttttcttct |
5410686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5391004 - 5391236
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||| || ||||| ||| | | |
|
|
| T |
5391004 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagtgctcttttcagcctgcaatacttgcagagcctgaatttggctttgaataagt |
5391103 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
|| |||| |||| ||| ||| ||||||| |||| ||||||||||| ||| | ||||| ||| | ||||||||| | || | |||| | |||||||| |
|
|
| T |
5391104 |
ttaattccgtgattcctcaagcgctgcataaactgcagaatttgagctatctcaacttgtccgatgctggctttgacgggtatgtcccaatagaaatttc |
5391203 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtc |
233 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| |
|
|
| T |
5391204 |
tcacctcacaaggttggttactcttgatttgtc |
5391236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5376684 - 5376921
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||| || |||| || ||||| ||| | | |
|
|
| T |
5376684 |
cttgatcttagtcgagagtctatttccggaggacttaacgattcaagtgccattttcagcctgcaatatctgcagggtctgaatttggcttttaataagt |
5376783 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
|| ||| | |||| ||| ||| ||||||| |||| ||||||||||||||| | ||||| || | ||||||||| | || ||| |||| | ||||||| |
|
|
| T |
5376784 |
ttaattttgtgattcctcaagcgctgcataaactgcagaatttgaggtatctcaacttgtctgatgctggctttgaggggcaggtcccaaaagaaattgc |
5376883 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttctt |
238 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
5376884 |
tcaccttacaaggttggttactcttgatttgtcttctt |
5376921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5500204 - 5500443
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||||| | ||| | ||||||| |||| || ||||| ||| | | |
|
|
| T |
5500204 |
cttgatcttagtcaagagtctatctcaggaggacttaatgattcaagtgctctattcagcttgcaagacttgcagagcctgaatttggctttgaataagt |
5500303 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
| ||||| |||| ||| | ||| || || |||| ||||||||||||||| ||||||| || | ||||||||| | || ||| |||| |||||||| |
|
|
| T |
5500304 |
tcaattctgtgattcctcatgagatgtataaactgcagaatttgaggtatctgaacttgtctgatgctggctttgaggggcaggtcccagaagaaatttc |
5500403 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttcttca |
240 |
Q |
| |
|
|||||| | |||||| || | ||||||| ||||||||||| |
|
|
| T |
5500404 |
tcacctaacaaggttagttattcttgatatgtcttcttca |
5500443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20326869 - 20327097
Alignment:
| Q |
1 |
cttgatcttagtcaagagtctatttccggaggacttaatgattcaagttctcttttcagccttcaatatctgcagagtttgaacttagctttaaatgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||| || |||| || ||||| ||| | | |
|
|
| T |
20326869 |
cttgatcttagtcaagagtctatttccggaggacttaacgattcaagtgccattttcagc---------ctgcagggtctgaatttggcttttaataagt |
20326959 |
T |
|
| Q |
101 |
ttcattctatgatgcctgaagagctgcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttt |
200 |
Q |
| |
|
|| ||| | |||| ||| ||| ||||||| |||| ||||||||||||||| | ||||| || | ||||||||| | | ||| |||| | ||||||| |
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|
| T |
20326960 |
ttaattttgtgattcctcaagcgctgcataaactgcagaatttgaggtatctcaacttgtctgatgctggctttgaggagcaggtcccaaaagaaattgc |
20327059 |
T |
|
| Q |
201 |
tcacctcaaaaggttggtcactcttgatttgtcttctt |
238 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
20327060 |
tcaccttacaaggttggttactcttgatttgtcttctt |
20327097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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