View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18571_low_9 (Length: 244)
Name: NF18571_low_9
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_low_9 |
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| [»] scaffold0346 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 4334196 - 4333983
Alignment:
| Q |
14 |
ataattctctaactccaagacaaaagataaagattttgacaaagcttgtttcaataagcttttgagggttcgaccagaagagttcaaattctttgaagag |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4334196 |
ataattctctaactccaagacaaaagataaagcttttgacaaagcttgtttcaataaggttttgagggttcgaccagaagagttcaaattctttgaagag |
4334097 |
T |
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| Q |
114 |
gcaagattgaagggccaagcacatgaaaaataagtcaatgttgtcgaaaggatttagtttctgaccgctggtctatgcaattatttttattttgtttatg |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4334096 |
gcaagattgaagggccaaacacatgaaaaataagtcaatgttgtcgaaaggatttagtttctgaccgctggtctgtgcaattatttttattttgtttatg |
4333997 |
T |
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| Q |
214 |
tatttgttattcat |
227 |
Q |
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||||| |||||||| |
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| T |
4333996 |
tatttcttattcat |
4333983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 4338432 - 4338232
Alignment:
| Q |
14 |
ataattctctaactcc-aagacaaaagataaagattttgacaaagcttgtttcaataagcttttgagggttcgaccagaagagttcaaattctttgaaga |
112 |
Q |
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||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4338432 |
ataattctcgaactcccaagacaa--gataaagattttgacaaagctggtttcaataaggttttgagggttcgaccagaagagttcaaattctttgaaga |
4338335 |
T |
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| Q |
113 |
ggcaagattgaagggccaagcacatgaaaaataagtcaatgttgtcgaaaggatttagtttctgaccgctggtctatgcaattatttttattttgtttat |
212 |
Q |
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| T |
4338334 |
ggcaagatggaagggccagacacatgaaaaataagtcaatgttgtcgaaaggatttagtttctgaccgctggtctgtgcaattatttttcgtttgtttat |
4338235 |
T |
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| Q |
213 |
gta |
215 |
Q |
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||| |
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| T |
4338234 |
gta |
4338232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0346 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0346
Description:
Target: scaffold0346; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 11899 - 12112
Alignment:
| Q |
14 |
ataattctctaactccaagacaaaagataaagattttgacaaagcttgtttcaataagcttttgagggttcgaccagaagagttcaaattctttgaagag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11899 |
ataattctctaactccaagacaaaagataaagatttcgacaaagctggtttcaataaggttttgagggttcgaccagaagagttcaaattctttgaagag |
11998 |
T |
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| Q |
114 |
gcaagattgaagggccaagcacatgaaaaataagtcaatgttgtcgaaaggatttagtttctgaccgctggtctatgcaattatttttattttgtttatg |
213 |
Q |
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||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
11999 |
gcaagattgaagggcaagacacatcgaaaataagtcaaagttgtcgaaaggatttagtttctgaccgttggtctgtgcaattatttttcttttgtttatg |
12098 |
T |
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| Q |
214 |
tatttgttattcat |
227 |
Q |
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|||||||| ||||| |
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| T |
12099 |
tatttgtttttcat |
12112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 1085914 - 1085786
Alignment:
| Q |
73 |
ttttgagggttcgaccagaagagttcaaattctttgaagaggcaagattgaagggccaagcacatgaaaaataagtcaatgttgtcgaaaggatttagtt |
172 |
Q |
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||||||||||| ||| ||| |||||||||||| ||| |||||||||| ||||||| || ||| || |||| ||| ||| |||||||||| ||||||||| |
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| T |
1085914 |
ttttgagggtttgactagaggagttcaaattccttggagaggcaagactgaagggtcagacacgtggaaaacaagccaaagttgtcgaaatgatttagtt |
1085815 |
T |
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| Q |
173 |
tctgaccgctggtctatgcaattattttt |
201 |
Q |
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|||||||| |||||| || | |||||||| |
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| T |
1085814 |
tctgaccgttggtctgtgtagttattttt |
1085786 |
T |
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