View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_high_1 (Length: 518)
Name: NF18572_high_1
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Complemental strand, 25493127 - 25492637
Alignment:
| Q |
9 |
ttagatccatatgaaaatgcagatgagc--aagttagcaaatatgcaatgcaattttcaattcataatactacaacatttaggacctttagtaacaataa |
106 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25493127 |
ttagatgcatatgaaaatgcagatgagcgcaagttagcaaatatgcaatgcaattttcaattcataatgctacaacatttaggacctttagtaacaataa |
25493028 |
T |
|
| Q |
107 |
tatttttcaaatgttactaaatctcatttttgttgtattgtaagtacagggagagaccaaattgaaacaattaattatacaagaaaaatgttgcaacata |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
25493027 |
tatttttcaaatgttactaaatctcatttttattgtagtgtaagtacatggagaggccaaactgaaacaattaattatacaagaaacatgttgcaacata |
25492928 |
T |
|
| Q |
207 |
ttaattgaaaaaggttaaccaaattagatgcatcttaccgataatgtgctagtgatacatcgttaattaaccatgttgttggtcagtaattaacgatggt |
306 |
Q |
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||||||| | ||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25492927 |
ttaattggccatggttaactaagttagatgcagcttaccgataatgtgccagtgatacatcgttaattaaccatgttgttagtcagtaattaacgatggt |
25492828 |
T |
|
| Q |
307 |
attggtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggattggagaattatatattgnnnnnnnnnnncttcat |
406 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |
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| T |
25492827 |
attagtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggataggagaattatattgtgtttttttatttcttcat |
25492728 |
T |
|
| Q |
407 |
catggactttaaggaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacat |
497 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25492727 |
catggactttaagtaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcacaaacat |
25492637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 147 - 497
Target Start/End: Complemental strand, 25501366 - 25501016
Alignment:
| Q |
147 |
taagtacagggagagaccaaattgaaacaattaattatacaagaaaaatgttgcaacatattaattgaaaaaggttaaccaaa-ttagatgcatcttacc |
245 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||| | | | ||||||| ||| |||||||||| |||| |
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| T |
25501366 |
taagtacagggagaggccaaattgaaacagttaattatacaagaaacatgtcccaacatattaatcggacatggttaactaaagttagatgcataatacc |
25501267 |
T |
|
| Q |
246 |
gataatgtgctagtgatacatcgttaattaaccatgttgttggtcagtaattaacgatggtattggtaaataattttcaattaatattgtcatatcatgt |
345 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25501266 |
aataatggatcagtgatacatcgttaattaaccatgttgttagtcagtaattaacgatggtattggtaaataattttcatataatattgtcatatcatgt |
25501167 |
T |
|
| Q |
346 |
ttaagaagataattacctctcagggattggagaattatatattgnnnnnnnnnnncttcat-catggactttaaggaataaggccaagattaaagagatc |
444 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||| || | | || |||||||||||| || |||||||||||||||||||| |
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| T |
25501166 |
ttaagaagataattac--ctcagggctaggagaattatattgtgttttttttcttcattatggatggactttaagtaaaaaggccaagattaaagagatt |
25501069 |
T |
|
| Q |
445 |
agtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacat |
497 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25501068 |
agttactttccccttggcttgtttcatctcgacttcatcttcatcagaaacat |
25501016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 424 - 496
Target Start/End: Complemental strand, 25642509 - 25642437
Alignment:
| Q |
424 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaaca |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||| |
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| T |
25642509 |
aaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaaca |
25642437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 25450055 - 25450015
Alignment:
| Q |
424 |
aaggccaagattaaagagatcagtttctttccccttggctt |
464 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
25450055 |
aaggccaagattaaagagatcagtttccttccccttggctt |
25450015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 25450155 - 25450102
Alignment:
| Q |
311 |
gtaaataattttcaattaatattgt--catatcatgtttaagaagataattacc |
362 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
25450155 |
gtaaatagttttcaattaatattgtggcatatcatgtttaagaacataattacc |
25450102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 25429385 - 25429355
Alignment:
| Q |
333 |
tgtcatatcatgtttaagaagataattacct |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
25429385 |
tgtcatatcatgtttaagaagataattacct |
25429355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 25473844 - 25473881
Alignment:
| Q |
424 |
aaggccaagattaaagagatcagtttctttccccttgg |
461 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
25473844 |
aaggccaagattaaagagatcggtttcttttcccttgg |
25473881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 26173823 - 26173784
Alignment:
| Q |
104 |
taatatttttcaaatgttactaaatctcatttttgttgta |
143 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| |
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| T |
26173823 |
taatattttttaagtgttactaaatctcatttttgttgta |
26173784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 9438791 - 9438823
Alignment:
| Q |
108 |
atttttcaaatgttactaaatctcatttttgtt |
140 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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|
| T |
9438791 |
atttttcaagtgttactaaatctcatttttgtt |
9438823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 495
Target Start/End: Original strand, 495153 - 495224
Alignment:
| Q |
424 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaac |
495 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||||||| || |||| |||||||||||||||||||| |
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|
| T |
495153 |
aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaac |
495224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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