View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_high_3 (Length: 359)
Name: NF18572_high_3
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 6920961 - 6921057
Alignment:
| Q |
142 |
agtactcattttgatatctaaacttaagaggtattacaaaggaatgagtgaatgacacttccataagaaaatattaaatattcattaaaatatgtag |
238 |
Q |
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| T |
6920961 |
agtactcattttgatatctaaaattaagaggtattacaaaggaatgagtaaatggcacttccatgaaaaaatattaaaaattcattaaaatatgtag |
6921057 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 6921170 - 6921251
Alignment:
| Q |
277 |
tctttcaaactcacctaagcttttcccctttttctttcaaatttatgatggctgcatcttcattttcatattctccatcttca |
359 |
Q |
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| T |
6921170 |
tctttcaaactcaccta-gcttttcccctttttctctcaaatttatgatggctgcatcttcattttcatattctccatcttca |
6921251 |
T |
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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 6920344 - 6920395
Alignment:
| Q |
12 |
agaagaagaagaatgtgtaatgatgttgtgttttgtgtttttcaattttaac |
63 |
Q |
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| T |
6920344 |
agaagaagaagaatgtgtaatgttgttgtgttttgtgtttttcaattttaac |
6920395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 6920417 - 6920461
Alignment:
| Q |
73 |
tgtgtgtaagattttttgtttgattaatgatgatgcttttttaat |
117 |
Q |
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| T |
6920417 |
tgtgtgtaagattttttgtttgattaatgatgatgtttttttaat |
6920461 |
T |
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