View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_high_8 (Length: 268)
Name: NF18572_high_8
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 30299184 - 30298923
Alignment:
| Q |
1 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccctttccttcatcaactactactatcactgtggcccttgaattgaagtg |
100 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30299184 |
ctctctgctcttgttggttctcatttctttgtcccacaagttcaaattctccttttccttcatcaactactactatcactgtggcccttgaattgaaatg |
30299085 |
T |
|
| Q |
101 |
tggcaacaaaagtgatccctaaaattaaatttaacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataatttttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299084 |
tggcaacaaaagtgatccctaaaattaaatttaacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataatttttta |
30298985 |
T |
|
| Q |
201 |
agatcattgttgccctacctccctaatctccgcataattgactaatatatccaagtctttaa |
262 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30298984 |
agatcatttttgctctacctccctaatctccgcataattaactaatatatccaagtctttaa |
30298923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30304391 - 30304132
Alignment:
| Q |
1 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccctttccttcatcaactactactatcactgtggcccttgaattgaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30304391 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccttttccttcatcaactactactatcaccgtggcccttgaattgaagtg |
30304292 |
T |
|
| Q |
101 |
tggcaacaaaagtgatccctaaaattaaattt-aacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataatttttt |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| | |||| |
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| T |
30304291 |
tggcaacaaaagtgatccctaaaattaaatttgaacaactaaattcattaatatttttaacgatagtaattagtgtcactttaattaataatagtctttt |
30304192 |
T |
|
| Q |
200 |
aagatcattgttgccctacctccctaatctccgcataattgactaatatatccaagtctt |
259 |
Q |
| |
|
||||| ||| | || ||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
30304191 |
aagataattttcgctctacctccctaatctccgcattagtgactaatatatccaagtctt |
30304132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30315304 - 30315045
Alignment:
| Q |
1 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccctttccttcatcaactactactatcactgtggcccttgaattgaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30315304 |
ctctctgctcttgctggttttcatttctttgccccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtg |
30315205 |
T |
|
| Q |
101 |
tggcaacaaaagtgatccctaaaattaaattt-aacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataatttttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| | |||||||| ||| | ||||||||||||||||||||||||||||| | |||| |
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| T |
30315204 |
tggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcgtaaatatttttaacgatagtaattagtgtcactttaattaataatagtctttt |
30315105 |
T |
|
| Q |
200 |
aagatcattgttgccctacctccctaatctccgcataattgactaatatatccaagtctt |
259 |
Q |
| |
|
||||| ||| | || ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30315104 |
aagataattttggctctacctccctaatctccgcataattcactaatatatccaagtctt |
30315045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 30286723 - 30286461
Alignment:
| Q |
1 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccctttccttcatcaactactactatcactgtggcccttgaattgaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
30286723 |
ctctctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtg |
30286624 |
T |
|
| Q |
101 |
tggcaacaaaagtgatccctaaaattaaattt-aacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataatttttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| | ||||||||||||||||| || |||||||||| ||| |
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|
| T |
30286623 |
tggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgatagtaattagtgtcacttaaactaataataatcgttt |
30286524 |
T |
|
| Q |
200 |
aagatcattgttgccctacctccctaatctccgcataattgactaatatatccaagtctttaa |
262 |
Q |
| |
|
||||| ||| | || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30286523 |
aagataattttcgctctacctccctaatctccgcataattgaccaatatatccaagtctttaa |
30286461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30291757 - 30291505
Alignment:
| Q |
1 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccctttccttcatcaactactactatcactgtggcccttgaattgaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30291757 |
ctctctgctcttgctggttttcatttctttgtcccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtg |
30291658 |
T |
|
| Q |
101 |
tggcaacaaaagtgatccctaaaattaaattt-aacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataatttttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| | |||||||| ||| ||||||||||||||||||||||||| | |||| |
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| T |
30291657 |
tggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcgtaaatatttttaac-------attagtgtcactttaattaataatagtctttt |
30291565 |
T |
|
| Q |
200 |
aagatcattgttgccctacctccctaatctccgcataattgactaatatatccaagtctt |
259 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30291564 |
aagattttttttgctttacctccctaatctccgcataattcactaatatatccaagtctt |
30291505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 22701384 - 22701414
Alignment:
| Q |
166 |
taattagtgtcactttaattaataataattt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
22701384 |
taattagtgtcactttaattaataataattt |
22701414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 13258419 - 13258390
Alignment:
| Q |
168 |
attagtgtcactttaattaataataatttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
13258419 |
attagtgtcactttaattaataataatttt |
13258390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 9633789 - 9633818
Alignment:
| Q |
168 |
attagtgtcactttaattaataataatttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9633789 |
attagtgtcactttaattaataataatttt |
9633818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 48703152 - 48703180
Alignment:
| Q |
168 |
attagtgtcactttaattaataataattt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
48703152 |
attagtgtcactttaattaataataattt |
48703180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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