View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_high_9 (Length: 254)
Name: NF18572_high_9
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 153601 - 153733
Alignment:
| Q |
107 |
ttcaattttaaatgacaaggaatgtgacataagtagttgcagaggataaaatgtttctatatttactttcgttgcatccttgcagttctcaaaggcttct |
206 |
Q |
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| T |
153601 |
ttcaattttaaatgacaaggaatgtgacataagtagttgcagaggataaaatgtttctatatttactttcgttgcatccttgcagttttcaaaggcttct |
153700 |
T |
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| Q |
207 |
atttgttttgttacttatttttcgaatacaaac |
239 |
Q |
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| T |
153701 |
atttgttttgttacttatttttcgaatacaaac |
153733 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 51167807 - 51167767
Alignment:
| Q |
147 |
agaggataaaatgtttctatatttactttcgttgcatcctt |
187 |
Q |
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||||||||||| | |||||||||| |||||||||||||||| |
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| T |
51167807 |
agaggataaaaggcttctatatttgctttcgttgcatcctt |
51167767 |
T |
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