View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_low_11 (Length: 227)
Name: NF18572_low_11
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 35165092 - 35164867
Alignment:
| Q |
2 |
catcagtagttaagttgtacccaccaaaacacaacacgtgttataactgcctcgtcgcataagtcataaactcggtatctaactcaagagccgccatagt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35165092 |
catcagtagttaagttgtacccaccaaaacacaacacgtgttataactgcctcgtcgcataagtcataaactcggtatctaattcaagagccgccatagt |
35164993 |
T |
|
| Q |
102 |
ttctggcgccaaaacaacctccaaatcaaccgtcccacttccatctctccctggaaacgccgaaatcttaccgtcaaatttattcgctttcccactccta |
201 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35164992 |
ttctggcgccaatacaacctccaaatcaaccgtcccacttccatctctccctggaaacgccgaaatcttaccgtcaaatttattcgctttcccactccta |
35164893 |
T |
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| Q |
202 |
accaccaacggtttcccccaaccaaa |
227 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
35164892 |
accaccaagggtttcccccaaccaaa |
35164867 |
T |
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