View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_low_12 (Length: 211)
Name: NF18572_low_12
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_low_12 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 10902551 - 10902660
Alignment:
| Q |
32 |
tgaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaagttaatatactggtgacattaaatacctt |
131 |
Q |
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| T |
10902551 |
tgaatatggatgacagaggagaagttttggatattgttagtgtactcaaaagtgcttctaacctggtggaacttgatatacaggtgacaataaatacctt |
10902650 |
T |
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| Q |
132 |
attctttctt |
141 |
Q |
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|||||||||| |
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| T |
10902651 |
attctttctt |
10902660 |
T |
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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 10863268 - 10863375
Alignment:
| Q |
32 |
tgaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaagttaatatactggtgacattaaatacctt |
131 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||| |||||| |||||||||| |
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| T |
10863268 |
tgaatatgaatgacagaggagaagttttgtatattgttagtgtactcaaaagtgcttctaacctggtggaacttactatacaggtgaccataaatacctt |
10863367 |
T |
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| Q |
132 |
attctttc |
139 |
Q |
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| T |
10863368 |
attctttc |
10863375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 40010333 - 40010264
Alignment:
| Q |
29 |
tcgtgaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggt |
98 |
Q |
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| T |
40010333 |
tcgtgaatttggatcgaagagaagaacttttgcatattgttagtgtactcaaaagtgcttctaacctggt |
40010264 |
T |
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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 16866301 - 16866373
Alignment:
| Q |
30 |
cgtgaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaa |
102 |
Q |
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| T |
16866301 |
cgtgaatttggatgaaagagaagaacttttgtatattgttagtgtactcaaaagtgcttctaacctggtggaa |
16866373 |
T |
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Target: scaffold0227 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 2497 - 2435
Alignment:
| Q |
31 |
gtgaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaac |
93 |
Q |
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| T |
2497 |
gtgaatttggatgaaagaggagaactatattatattgttagtgtactcaaaagtgcttctaac |
2435 |
T |
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