View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18572_low_5 (Length: 275)
Name: NF18572_low_5
Description: NF18572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18572_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 4428329 - 4428088
Alignment:
| Q |
18 |
attacatcaccatgcctagttattattatgattatgtagtttctaaaccagatgtaacattgatgaccgtttattatcttctttccttgtttgcttttgc |
117 |
Q |
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| T |
4428329 |
attacatcaccatgcctagttattattatgattatgtagtttctaaaccagatgtaacattgatgaccgtttattatcttctttccttgtt-gcttttgc |
4428231 |
T |
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| Q |
118 |
agaatatatatatgtttagaaacaaatctgggccaaatatattacttagctaattattaggaatcttaagtatttagatcaggaaacaagatgcaatttg |
217 |
Q |
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| T |
4428230 |
agaatatat----gtttagaaacaaatctgggccaaatatattacttagctaattattaggaatcttaagtatttggatcaggaaacaagatgcaatttg |
4428135 |
T |
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| Q |
218 |
gatcggtgatgattgatgtaaccagtctccctgagcatattcttgga |
264 |
Q |
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| T |
4428134 |
gatcggtgatgattgatgcaaccagtctccctgagcatatttttgga |
4428088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 4439558 - 4439319
Alignment:
| Q |
19 |
ttacatcaccatgcctagttattattatgattatgtagtttctaaaccagatgt---aacattgatgaccgtttattatcttctttccttgtttgctttt |
115 |
Q |
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| T |
4439558 |
ttacatcaccatgcctagttattattatgattatgtagtttctaaactagatgtaacaacattgatgaccgtttattatcttctttccttg-ttactttt |
4439460 |
T |
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| Q |
116 |
gcagaatatatatatgtttagaaacaaatctgggccaaata---tattacttagctaattattaggaatcttaagtatttagatcaggaaacaagatgca |
212 |
Q |
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| T |
4439459 |
gcaga----ctatatgtttagcaacaaatctggaccaaatatattattacttagctaattattgggaatcttaaatatttggattagtaaacaagatgca |
4439364 |
T |
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| Q |
213 |
atttggatcggtgatgattgatgtaaccagtctccctgagcatat |
257 |
Q |
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| T |
4439363 |
atttggattagtgatgattgatgtaaccagtctacttgagcatat |
4439319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 20695697 - 20695790
Alignment:
| Q |
141 |
aaatctgggccaaatatattacttagctaattattaggaatcttaagtatttagatcaggaaacaagatgcaatttggatcggtgatgattgat |
234 |
Q |
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| T |
20695697 |
aaatctgggccaaatatattgctgagctaattattaggaatcttaaatattgggattaggaaacaggttgctattgggatcaatgatggttgat |
20695790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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