View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_high_10 (Length: 281)
Name: NF18573_high_10
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 4410273 - 4410011
Alignment:
| Q |
1 |
agttagttatgtagatttaaacttgtctcgatcgtttttgaaaagattaagatacagagaagagaggagttattagtgagagatcacaccttaaggagac |
100 |
Q |
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| T |
4410273 |
agttaattatgtagatttaaacttgtctcaatcgtctttgaaaagattaagatacagagaagagaggagttattagtgagagatcacaccttaaggagac |
4410174 |
T |
|
| Q |
101 |
acaacttagtcaaatataagttggcaatttccagaggcccttggcacattagataatcttttgaaaatggcattcttcttggttacgtccaccgaaatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4410173 |
acaacttagtcaaatataagttggcaatttccagaggcccttggcacattagataatcttttgaaaatggcattcttcttggttatgtccaccgaaatat |
4410074 |
T |
|
| Q |
201 |
cagaaataaccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaataacaact |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410073 |
cagaaataaccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaataacaact |
4410011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 4426833 - 4426981
Alignment:
| Q |
108 |
agtcaaatataagttggcaatttccagaggcccttggcacattagataatcttttgaaaatggcattcttcttggttacgtccaccgaaatatcagaaat |
207 |
Q |
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|||||||| ||||||| || |||| |||||||||||||||| ||||| | |||||| |||| | | ||||| ||| |||||| |||||||||| ||| |
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| T |
4426833 |
agtcaaatttaagttgacacattcctgaggcccttggcacatcagatattgttttgagaatgtcgtacttctcctttaagtccacggaaatatcagcaat |
4426932 |
T |
|
| Q |
208 |
aaccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaat |
256 |
Q |
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| T |
4426933 |
aatcaatgtctttaaaacaagtcctttttgtaaaacatactcagcaaat |
4426981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 4432967 - 4432847
Alignment:
| Q |
138 |
cccttggcacattagataatcttttgaaaatggcattcttcttggttacgtccaccgaaatatcagaaataaccattgtcttcaaagcaaatccatttcg |
237 |
Q |
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||||| |||| |||||||| | |||| |||| | | ||||||| ||| |||||| ||||||||| ||||| ||||||||||||| ||| ||| ||| | |
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| T |
4432967 |
cccttcgcactttagataacttattgagaatgtcgtacttcttgcttaggtccactgaaatatcatcaataatcattgtcttcaaaacaagtcctttttg |
4432868 |
T |
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| Q |
238 |
caaaatatactcaacaaataa |
258 |
Q |
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| T |
4432867 |
cagaatatactcagcaaataa |
4432847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 256
Target Start/End: Original strand, 32848796 - 32848976
Alignment:
| Q |
76 |
gtgagagatcacaccttaaggagacacaa-cttagtcaaatataagttggcaatttccagaggcccttggcacattagataatcttttgaaaatggcatt |
174 |
Q |
| |
|
|||||||||||||| ||| ||||| || | || |||| ||| |||||||||| || |||| |||||||||||||| ||||||||||||| || | | | |
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| T |
32848796 |
gtgagagatcacacttta-ggagataccagctcagtcgaatgtaagttggcatgtttcagatgcccttggcacatttgataatcttttgagaacgccgta |
32848894 |
T |
|
| Q |
175 |
cttcttggttacgtccaccgaaatatcagaaataaccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaat |
256 |
Q |
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|||||| || || || ||||||||||| |||| || |||||| ||| ||| ||| ||| |||||| || |||||||||| |
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| T |
32848895 |
cttcttactttggttcaaggaaatatcagagataatcaatgtctttaaaacaagtcctttttgcaaaacatgctcaacaaat |
32848976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 4442563 - 4442483
Alignment:
| Q |
134 |
gaggcccttggcacattagataatcttttgaaaatggcattcttcttggttacgtccaccgaaatatcagaaataaccatt |
214 |
Q |
| |
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||||||||||||||||| ||||||||||||| |||| ||| |||||| || ||| | |||||||||||||||| |||| |
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| T |
4442563 |
gaggcccttggcacattcgataatcttttgagaatgtcatacttcttactttggtctaaggaaatatcagaaataatcatt |
4442483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 46839721 - 46839785
Alignment:
| Q |
194 |
gaaatatcagaaataaccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaataa |
258 |
Q |
| |
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||||||||| ||||| ||||||||||||| ||| ||| ||| ||||||||||||||||||||| |
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|
| T |
46839721 |
gaaatatcatcaataatcattgtcttcaaaacaagtccttttttcaaaatatactcaacaaataa |
46839785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 8341929 - 8341783
Alignment:
| Q |
110 |
tcaaatataagttggcaatttccagaggcccttggcacattagataatcttttgaaaatggcattcttcttggttacgtccaccgaaatatcagaaataa |
209 |
Q |
| |
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|||||| | |||||||| || |||||||||||||||||| ||||| | |||| |||| || |||||| ||| ||||| |||||||||| ||||| |
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| T |
8341929 |
tcaaatttcagttggcacattgcagaggcccttggcacatcagatactaacttgagaatgagatacttcttttttaggtccaaggaaatatcagcaataa |
8341830 |
T |
|
| Q |
210 |
ccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaat |
256 |
Q |
| |
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|| ||||| ||| || ||||||| |||||| ||||||||||||| |
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| T |
8341829 |
tcaacgtctttaaaacatgtccattttgcaaaacatactcaacaaat |
8341783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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