View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_high_14 (Length: 273)
Name: NF18573_high_14
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 13292721 - 13292559
Alignment:
| Q |
1 |
caaattggaagatatcatgattttgttgagagaaattaaacaatattcaatatatgcacataactgacgaaaaagcagaagaaatgtaagttcaattcct |
100 |
Q |
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| T |
13292721 |
caaattggaagatatcatgattttgttgagagaaattaaacaatattcaatacatgcacatatctgacgaagaagcagaagaaacgtaaattcaattcct |
13292622 |
T |
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| Q |
101 |
acaacactcgttctaagggtgaacccaaaggtgtttgagctacaccttgtcttctaggccgta |
163 |
Q |
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| T |
13292621 |
acaacactcgttctaagggtgaacccaaaggtgtttgagctacaccttatcttctaggccgta |
13292559 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 10057714 - 10057661
Alignment:
| Q |
92 |
tcaattcctacaacactcgttctaagggtgaacccaaaggtgtttgagctacac |
145 |
Q |
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| T |
10057714 |
tcaattcctataacactcgtttcaaaggtgaacccaaaggtggttgagcaacac |
10057661 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 38233439 - 38233475
Alignment:
| Q |
92 |
tcaattcctacaacactcgttctaagggtgaacccaa |
128 |
Q |
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| T |
38233439 |
tcaattcctacaacactcgttccaagggtgcacccaa |
38233475 |
T |
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