View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_high_5 (Length: 394)
Name: NF18573_high_5
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 10066002 - 10065638
Alignment:
| Q |
12 |
atgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10066002 |
atgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttg |
10065903 |
T |
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| Q |
112 |
cttagatttacttaaaaaagtgtgtaacatacagagtaatctcatctttcacttgattttttctttgactacttaactatacttgtttacatgtgatgat |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10065902 |
cttagatttacttaaaaaagtgtgtatcatacagagtaatctcatctttcacttgattttttctttaactacttaactatacttgtttacatgtgatgat |
10065803 |
T |
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| Q |
212 |
aggtgccaattttcggcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtga |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065802 |
aggtgccaattttcagcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtga |
10065703 |
T |
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| Q |
312 |
aggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatg |
376 |
Q |
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| T |
10065702 |
aggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatg |
10065638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 48465866 - 48465987
Alignment:
| Q |
12 |
atgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttg |
111 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | | |||||||| |
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| T |
48465866 |
atgaacaatacaaatggcaagaaaatagaggtgttgaagaagagactttaattcacaacctccctaaagatctcagaagagacataaagcgtcatctttg |
48465965 |
T |
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| Q |
112 |
cttagatttacttaaaaaagtg |
133 |
Q |
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||||| |||| | ||||||||| |
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| T |
48465966 |
cttagctttagtaaaaaaagtg |
48465987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 48466125 - 48466235
Alignment:
| Q |
244 |
ttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtgaaggtgatccagtggacgaaatgctcttcatca |
343 |
Q |
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|||||||||||||||||||||| ||||||||| || || ||||| ||||| || | | ||||||| |||| |||||||| || || ||||| ||||| | |
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| T |
48466125 |
ttgttggatgcaatgtgtgatagactgaagccagttctgtatacagagaagagctgcattgttcgcgaagaagatccagttgatgagatgcttttcatta |
48466224 |
T |
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| Q |
344 |
tgcgcggaaaa |
354 |
Q |
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|||| |||||| |
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| T |
48466225 |
tgcgaggaaaa |
48466235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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