View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_high_7 (Length: 336)
Name: NF18573_high_7
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 45277138 - 45276824
Alignment:
| Q |
6 |
atagtccatgatttttgcaaatgcaactgcaaatattaatctctcgagtcgggtagaactgagagttaacattgttgcatttaaacttaagatgatgttt |
105 |
Q |
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| T |
45277138 |
atagtccatgatttttgcaaatgcaactgcaaacattactctctcgagtcgggtagaactgagagttaacactgttgcatttaaacttaagatgatgttt |
45277039 |
T |
|
| Q |
106 |
gccaatcgacttatacatcctaaaattgtaaagcgttggtcaaaataatcaatctatcactgttagagattatagagacattaaccaaataagttgcccc |
205 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
45277038 |
gccaatcgacttatacatcctaaaattgtaaatcgttggtcaaaataatcaatctatcagtgttagagattatagagacattaaccaaataagtt--ccc |
45276941 |
T |
|
| Q |
206 |
tccgtattaatagttaatcattcgttcgagtttgaagtgacttccaactcgttaa-ctttaagtcaaaccaatttagttatccaacccaaataatatcaa |
304 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45276940 |
tccgtgttaatagttaatcattcgttcgagtttgaagtgacttccaacttgttaacctttaagtcaaaccaattgagttatccaacccaaataatatcaa |
45276841 |
T |
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| Q |
305 |
ctttggaactcgaactt |
321 |
Q |
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||||||||||||||||| |
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| T |
45276840 |
ctttggaactcgaactt |
45276824 |
T |
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