View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_high_9 (Length: 305)
Name: NF18573_high_9
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 937192 - 937479
Alignment:
| Q |
16 |
atatatggtatgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattac---atcaagagagaaaattaaataggattc |
112 |
Q |
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| T |
937192 |
atatatggtatgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattactacatcaagagagaaaattaaataggattc |
937291 |
T |
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| Q |
113 |
aatttcttcaatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacac |
212 |
Q |
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| T |
937292 |
aatttcttcaatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacac |
937391 |
T |
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| Q |
213 |
ttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaataatctac |
300 |
Q |
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| T |
937392 |
ttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctac |
937479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 300
Target Start/End: Original strand, 935430 - 935704
Alignment:
| Q |
25 |
atgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattacatcaagagagaaaattaaataggattcaatttcttcaat |
124 |
Q |
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| T |
935430 |
atgaaacatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattacatga-gagtgaaaattaaacaggattcaatttcttgaat |
935528 |
T |
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| Q |
125 |
gacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgaggca |
224 |
Q |
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| T |
935529 |
gacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgaggca |
935628 |
T |
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| Q |
225 |
cagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaataatctac |
300 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
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| T |
935629 |
caggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctac |
935704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 7584529 - 7584363
Alignment:
| Q |
41 |
aacattgcacaattacaagcaattggagattagtcatg---ttattacatcaagagagaaaattaaataggattcaatt--tcttcaatgacattctttt |
135 |
Q |
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| T |
7584529 |
aacattgcacaatcacaagctattggagattaatcatgctattattacattaagaaaggaaattaaataggattcaatttatcttgaaagacattcttta |
7584430 |
T |
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| Q |
136 |
ggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggct |
202 |
Q |
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| T |
7584429 |
gatgacttttacagtaatgagagccaaaactgtagttgttgggacagatataacatcaagaatggct |
7584363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 7586031 - 7585920
Alignment:
| Q |
105 |
taggattcaatttcttcaatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggcttt |
204 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||| | |||||||||||| ||||| ||||||||| | | || | |||||||| ||||| |||| |
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| T |
7586031 |
taggattcaatttcttaaatgacattcttttgatgacttttatagcaatgagagccaaaattgtagctgttagtataacggtaacatcaagaatgacttt |
7585932 |
T |
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| Q |
205 |
cataacacttag |
216 |
Q |
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|||||||||||| |
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| T |
7585931 |
cataacacttag |
7585920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 7584356 - 7584291
Alignment:
| Q |
235 |
tgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaataatctac |
300 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||||||| | ||||||||| ||| |||||| |
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| T |
7584356 |
tgttctcttagctatcatagctgctgtaggtgatactattccattgatcatcatataatcatctac |
7584291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 7579370 - 7579324
Alignment:
| Q |
230 |
tgtcctgttctcttagcta-ccatagctgctggaggtgccactattc |
275 |
Q |
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| T |
7579370 |
tgtcttgttctcttagctaaccatagctgctggaggtgccaatattc |
7579324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 300
Target Start/End: Complemental strand, 38410495 - 38410338
Alignment:
| Q |
146 |
acagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgaggca---cagactgtcctgttctct |
242 |
Q |
| |
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|||||||||||||| |||| ||||||| || ||||||||||||||||||||| | ||||||| |||| ||||| | | ||||||||||| | |
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| T |
38410495 |
acagcaatgagagccaaaactgtagctgagggaacaaagataacatcaggaatgacattcataaattttagctgaggaaatgttgtttgtcctgttcttt |
38410396 |
T |
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| Q |
243 |
tagctaccatagctgctggaggtgccactattccagttatcatcatagaataatctac |
300 |
Q |
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|||| || || |||||||| |||||||||||||||| || |||||||| | |||||| |
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| T |
38410395 |
tagccactatggctgctggtggtgccactattccagcgattatcatagattcatctac |
38410338 |
T |
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