View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_low_1 (Length: 523)
Name: NF18573_low_1
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 43410764 - 43411291
Alignment:
| Q |
11 |
atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat |
110 |
Q |
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| T |
43410764 |
atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat |
43410863 |
T |
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| Q |
111 |
ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc----ct |
206 |
Q |
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| T |
43410864 |
ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagct |
43410963 |
T |
|
| Q |
207 |
agctagcttacaacttc---tcatctgaatgtgttg------------tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatca |
291 |
Q |
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| T |
43410964 |
agctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatca |
43411063 |
T |
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| Q |
292 |
atgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcatattgtttaattaga |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
43411064 |
atgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttgttgtttaattaga |
43411163 |
T |
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| Q |
392 |
gttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactattttgttcatctcactcataagaattacattaa |
480 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43411164 |
gttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactattttgttcatctcactcataagaattacattaa |
43411263 |
T |
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| Q |
481 |
cnnnnnnncgcttttcaatgacacaact |
508 |
Q |
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| T |
43411264 |
ctttttttcgcttttcaatgacacaact |
43411291 |
T |
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