View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18573_low_11 (Length: 281)
Name: NF18573_low_11
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 5900467 - 5900712
Alignment:
| Q |
12 |
atcatcacaatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5900467 |
atcatcacaatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaat |
5900566 |
T |
|
| Q |
112 |
actacattattgcaagaattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5900567 |
gctacattattgcaagaattaatctgcaatc-----atcaaccttgaatgacgacacaatagattgcaattctcaacaatatcaaccactcattggatca |
5900661 |
T |
|
| Q |
212 |
caattctccgcaatatcaagaaccataacacgaccacagctacaatctaaa |
262 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5900662 |
caattctccgcaatatcaagaaccacaacacgaccacagctacaatctaaa |
5900712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 5861636 - 5861854
Alignment:
| Q |
28 |
aataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaatactacattattgcaag |
127 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
|
|
| T |
5861636 |
aataagaacatattcacacatgattttgttctttttcagtgttattaaaatatcttgtatctttaattgattgcatctataaaaactacaatagtgcaag |
5861735 |
T |
|
| Q |
128 |
aattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatcacaattctccgcaatat |
227 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || ||||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
5861736 |
aattaatctgcaatcacaatattagccttgaataacgacacaatcgattgcaattctccacaatatcaaccactcattagagcacaattctccgcaatat |
5861835 |
T |
|
| Q |
228 |
caagaaccataacacgacc |
246 |
Q |
| |
|
|||||| || | ||||||| |
|
|
| T |
5861836 |
caagaatcaaagcacgacc |
5861854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University