View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_low_13 (Length: 274)
Name: NF18573_low_13
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_13 |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 24059382 - 24059120
Alignment:
| Q |
10 |
tcgaagaatatgtcctttcctgcaacacatacatttatgatacatttaaaatatcaactttaacagactttggtttcatacaacatcttctttgtcatct |
109 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
24059382 |
tcgaaaaaaatgtcctttcctgcaacacatacatttatgatacatttaaaatatcaactttaacagactatggtttcatacaacatcttctgtgtcatct |
24059283 |
T |
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| Q |
110 |
acaaatccatttcctacacttgcataagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagtt |
209 |
Q |
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| T |
24059282 |
acaaatccatttcctacacttgcataagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagtt |
24059183 |
T |
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| Q |
210 |
gacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcacttccaagcca |
272 |
Q |
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| T |
24059182 |
gacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcacttccaagcca |
24059120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 14685517 - 14685406
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
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| T |
14685517 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataacacataccccattgatggtctgttctccggacgctcctccaagcac |
14685418 |
T |
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| Q |
263 |
ttccaagccaac |
274 |
Q |
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| T |
14685417 |
ttccaagccaac |
14685406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 14670796 - 14670907
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
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| T |
14670796 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14670895 |
T |
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| Q |
263 |
ttccaagccaac |
274 |
Q |
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| T |
14670896 |
ttccatgccaac |
14670907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 14705207 - 14705096
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
14705207 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14705108 |
T |
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| Q |
263 |
ttccaagccaac |
274 |
Q |
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||||| |||||| |
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| T |
14705107 |
ttccatgccaac |
14705096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 30731024 - 30730913
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
30731024 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
30730925 |
T |
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| Q |
263 |
ttccaagccaac |
274 |
Q |
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| T |
30730924 |
ttccatgccaac |
30730913 |
T |
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