View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_low_15 (Length: 267)
Name: NF18573_low_15
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 4410596 - 4410345
Alignment:
| Q |
16 |
attcaccaagttatatactaaatatatggcataaaattcattagttttccttcaatgtaatagctataaatctaataagatttgaatcttctggctaagc |
115 |
Q |
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| T |
4410596 |
attcaccaagttatatactaaatatgtggcataaaattcattagttttccttcaatgtaatagctataaatctaataagatttgaatcttctggctaagc |
4410497 |
T |
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| Q |
116 |
ctgaaattctaaattaaaacaaccatgtttatagaggaaaaacttaaataattaagtttagtaaagagggccaatagtcctcattattatgacttatgga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
4410496 |
ctgaaattctaaattaaaacaaccatgtttatagaggaaaaacttaaataattaagtttagtagagagggccaatagtcctaattattatgacttatgga |
4410397 |
T |
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| Q |
216 |
aaaaattactagaccaaagaaaatcagaaactttggggtattgaattgaaac |
267 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410396 |
aaaaattacaagaccaaagaaaatcagaaactttggggtattgaattgaaac |
4410345 |
T |
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