View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_low_19 (Length: 248)
Name: NF18573_low_19
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 30907772 - 30907549
Alignment:
| Q |
16 |
aagagttactcgaaccaccggttcggtaagtgcaacaaagcggaccggtctgacacgtaggcacggtggcgttgatgtaagcatgacaagcactagcggc |
115 |
Q |
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| T |
30907772 |
aagagttactcgaaccaccggttcggtaagtgcaacaaagcggaccggtctgacacgtaggcacggtggcgttgatgtaagcatgacaagcactagcggc |
30907673 |
T |
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| Q |
116 |
ggagcagttaagcggagaccgaagaaggtcgcgtgtgcagttgaggtacacgatggtgttggagctagtgatgttgaacggaagagtgttgttgagtatg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30907672 |
ggagcagttaagcggagaccgaagaaggtcgcgtgtgcagttgaggtacacgatggtattggagctagtgatgttgaacggaagagtgttgttgagtatg |
30907573 |
T |
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| Q |
216 |
ataccttcatatattttatctgtg |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
30907572 |
ataccttcatatattttatctgtg |
30907549 |
T |
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