View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18573_low_20 (Length: 212)

Name: NF18573_low_20
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18573_low_20
NF18573_low_20
[»] chr8 (9 HSPs)
chr8 (1-99)||(1454750-1454852)
chr8 (2-88)||(1461482-1461565)
chr8 (2-88)||(1555399-1555482)
chr8 (2-88)||(1566850-1566933)
chr8 (2-88)||(1456404-1456487)
chr8 (162-201)||(1454929-1454968)
chr8 (88-116)||(1454855-1454883)
chr8 (165-201)||(1456567-1456603)
chr8 (165-201)||(1555285-1555321)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1454750 - 1454852
Alignment:
Q  1 acatacactgcatcagattcttccatctccacaaacccttttatcatgcctttttcacaatcgctataagcaacaatgaatatata----cgtacatgag 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||    
T  1454750 acatacactgcatcagattcttccatctccacaaacccttttatcatgcctttttcacaatcgctataagcaacaatgaataaatagatacgtacatgag 1454849  T
Q  97 ata 99  Q
    |||    
T  1454850 ata 1454852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 1461482 - 1461565
Alignment:
Q  2 catacactgcatcagattcttccatctccacaaacccttttatcatgcctttttcacaatcgctataagcaacaatgaatatatacg 88  Q
    ||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| |||||   |||||||||||||||||    
T  1461482 catacactgcatcagattctttcatctccacaaacccatctttcatgcctttttcacaatcactata---aacaatgaatatatacg 1461565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 1555482 - 1555399
Alignment:
Q  2 catacactgcatcagattcttccatctccacaaacccttttatcatgcctttttcacaatcgctataagcaacaatgaatatatacg 88  Q
    ||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| |||||   |||||||||||||||||    
T  1555482 catacactgcatcagattctttcatctccacaaacccatctttcatgcctttttcacaatcactata---aacaatgaatatatacg 1555399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 1566933 - 1566850
Alignment:
Q  2 catacactgcatcagattcttccatctccacaaacccttttatcatgcctttttcacaatcgctataagcaacaatgaatatatacg 88  Q
    ||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| |||||   |||||||||||||||||    
T  1566933 catacactgcatcagattctttcatctccacaaacccatctttcatgcctttttcacaatcactata---aacaatgaatatatacg 1566850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 1456404 - 1456487
Alignment:
Q  2 catacactgcatcagattcttccatctccacaaacccttttatcatgcctttttcacaatcgctataagcaacaatgaatatatacg 88  Q
    ||||||||||||||||||||| |||||||||||| || | | ||||||||||||||||||| |||||   |||||||||||||||||    
T  1456404 catacactgcatcagattctttcatctccacaaatccatctttcatgcctttttcacaatcactata---aacaatgaatatatacg 1456487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 1454929 - 1454968
Alignment:
Q  162 ggtcagaataccttgtattaataactggcttatattcttc 201  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1454929 ggtcagaataccttgtattaataactggcttatattcttc 1454968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 1454855 - 1454883
Alignment:
Q  88 gtacatgagatatacatacatttatgaat 116  Q
    |||||||||||||||||||||||||||||    
T  1454855 gtacatgagatatacatacatttatgaat 1454883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 1456567 - 1456603
Alignment:
Q  165 cagaataccttgtattaataactggcttatattcttc 201  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1456567 cagagtaccttgtattagtaactggcttatattcttc 1456603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 1555321 - 1555285
Alignment:
Q  165 cagaataccttgtattaataactggcttatattcttc 201  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1555321 cagagtaccttgtattagtaactggcttatattcttc 1555285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University