View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18573_low_4 (Length: 409)
Name: NF18573_low_4
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 3429003 - 3429383
Alignment:
| Q |
11 |
atactaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcat |
110 |
Q |
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| T |
3429003 |
atactaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcat |
3429102 |
T |
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| Q |
111 |
tttcttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggtttctc |
210 |
Q |
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| T |
3429103 |
tttcttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggtttctc |
3429202 |
T |
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| Q |
211 |
attcccagccataattacaaggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtcccca |
310 |
Q |
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| T |
3429203 |
attcccagccataattacaaggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtcccca |
3429302 |
T |
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| Q |
311 |
tcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgct |
391 |
Q |
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| T |
3429303 |
tcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgct |
3429383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 34 - 384
Target Start/End: Original strand, 3425544 - 3425897
Alignment:
| Q |
34 |
ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaacct---tcattttcttgtgaagtggaagta |
130 |
Q |
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| T |
3425544 |
ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta |
3425643 |
T |
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| Q |
131 |
gttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggtttctcattcccagccataattacaa |
230 |
Q |
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| T |
3425644 |
gctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgggttctcattaccagccataatgacaa |
3425743 |
T |
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| Q |
231 |
ggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtccccatcttggttgttccttgagag |
330 |
Q |
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| T |
3425744 |
ggatattctcttcataaaccttgacaggtttcttagtttgagggtcactttctttgttgtccaaagcactatgatcctcatcttggttgtcccttgagag |
3425843 |
T |
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| Q |
331 |
tttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataat |
384 |
Q |
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| T |
3425844 |
tctacaatatgagcatgctagtaccaataacgccaaggctatgagacctataat |
3425897 |
T |
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