View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18573_low_6 (Length: 349)
Name: NF18573_low_6
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 24059066 - 24058734
Alignment:
| Q |
1 |
tccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaatccatctgctgcgttggaagggcatcatctagagcaggcttcc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24059066 |
tccatcatttcatgaaaagtgccctttttatggcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcc |
24058967 |
T |
|
| Q |
101 |
cacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24058966 |
cacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagct |
24058867 |
T |
|
| Q |
201 |
accctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24058866 |
accctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagaga |
24058767 |
T |
|
| Q |
301 |
atgtttgttgttttcacatcacggtgaattatg |
333 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
24058766 |
atgtttgttgtcttcacatcacggtgaattatg |
24058734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 14685354 - 14685022
Alignment:
| Q |
1 |
tccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaatccatctgctgcgttggaagggcatcatctagagcaggcttcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||| | |||||||| |||||| |||||||||||||||||||||| |||||| || | |
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|
| T |
14685354 |
tccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacattgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttc |
14685255 |
T |
|
| Q |
101 |
cacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagct |
200 |
Q |
| |
|
||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||| || || |
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|
| T |
14685254 |
cacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaaatgtagtcctaaaatattcaggatcaacatagccaaaact |
14685155 |
T |
|
| Q |
201 |
accctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagaga |
300 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
14685154 |
accctttacattcgttgtaacgtgactcttatcaagaattggaccctttttcgatatgccaaaatcagcaacttttggcacaagattttcgtccaagaga |
14685055 |
T |
|
| Q |
301 |
atgtttgttgttttcacatcacggtgaattatg |
333 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |
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|
| T |
14685054 |
atgtttgctgtcttcacatcacggtgaattatg |
14685022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 14670959 - 14671291
Alignment:
| Q |
1 |
tccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaatccatctgctgcgttggaagggcatcatctagagcaggcttcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| || | |
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|
| T |
14670959 |
tccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttc |
14671058 |
T |
|
| Q |
101 |
cacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagct |
200 |
Q |
| |
|
||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| || || |
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|
| T |
14671059 |
cacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaaacttagtcctaaaatattcaggatcaacatagccaaaact |
14671158 |
T |
|
| Q |
201 |
accctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagaga |
300 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
14671159 |
accctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgatatgccaaaatcagcaacttttggtacaagattttcgtccaagaga |
14671258 |
T |
|
| Q |
301 |
atgtttgttgttttcacatcacggtgaattatg |
333 |
Q |
| |
|
||||||||||| || | ||||||||||||||| |
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|
| T |
14671259 |
atgtttgttgtctttatgtcacggtgaattatg |
14671291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 14705044 - 14704884
Alignment:
| Q |
1 |
tccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaatccatctgctgcgttggaagggcatcatctagagcaggcttcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| || | |
|
|
| T |
14705044 |
tccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttc |
14704945 |
T |
|
| Q |
101 |
cacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaa |
161 |
Q |
| |
|
||||||||||||||| ||||||||| || | ||| ||||||||||||||||||| ||||| |
|
|
| T |
14704944 |
cacatataacttcaatcaacaccactccataagagaaaacatctgatttcttagttagaaa |
14704884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 30730861 - 30730529
Alignment:
| Q |
1 |
tccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaatccatctgctgcgttggaagggcatcatctagagcaggcttcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| || | |
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|
| T |
30730861 |
tccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccgcaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttc |
30730762 |
T |
|
| Q |
101 |
cacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagct |
200 |
Q |
| |
|
||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
30730761 |
cacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaaatttagtcctaaaatattctggatcaacttagccaaaact |
30730662 |
T |
|
| Q |
201 |
accctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagaga |
300 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
30730661 |
accctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgatatgccaaaatcagaaacttttggcacaatctttttgtccaagaga |
30730562 |
T |
|
| Q |
301 |
atgtttgttgttttcacatcacggtgaattatg |
333 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |
|
|
| T |
30730561 |
atgtttgttgtcttcacgtcacggtgaattatg |
30730529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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