View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18573_low_8 (Length: 323)
Name: NF18573_low_8
Description: NF18573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18573_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 38 - 306
Target Start/End: Original strand, 5771128 - 5771396
Alignment:
| Q |
38 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaacgttacctctc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5771128 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaacgttacctctc |
5771227 |
T |
|
| Q |
138 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5771228 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
5771327 |
T |
|
| Q |
238 |
tgattctgcataatcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5771328 |
tgattctgcataatcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctg |
5771396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 38 - 306
Target Start/End: Complemental strand, 33866924 - 33866656
Alignment:
| Q |
38 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaacgttacctctc |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33866924 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaatgttacctctc |
33866825 |
T |
|
| Q |
138 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866824 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
33866725 |
T |
|
| Q |
238 |
tgattctgcataatcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctg |
306 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866724 |
tgattctgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctg |
33866656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 44574085 - 44574029
Alignment:
| Q |
250 |
atcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctg |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
44574085 |
atcatcatgtatgtcaagatggtttaatttgagagcagcggctgtttgcgtcgtctg |
44574029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 5894555 - 5894614
Alignment:
| Q |
138 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttga |
197 |
Q |
| |
|
||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
5894555 |
attgaaggatttacctcctttatgttggttagcgattggtaatgcacattcttttcttga |
5894614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University