View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_high_12 (Length: 291)
Name: NF18574_high_12
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_high_12 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 2788008 - 2787732
Alignment:
| Q |
15 |
tcatcattccttctctatctcactcactatttcattcattcatagtcaacactattgtatcaattgcatgttcttcataaataatcaaatcaaatatgga |
114 |
Q |
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| T |
2788008 |
tcatcattccttctctatctcactcactatttcattcattcatagtcaacactattgtatcaattgcatgttcttcataaataatcaaatcaaatatgga |
2787909 |
T |
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| Q |
115 |
acaaacacaacaagaaattggaatcaaaatctacaacacaacaccgccaccacaagaagccatgggggccgtaacgcagcagccttctgatccaccggaa |
214 |
Q |
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| T |
2787908 |
acaaacacaacaagaaattggaatcaaaatctacaatacaacaccgccaccacaagaagtcatgggggccgtaacgcagcagccttctgatccaccggaa |
2787809 |
T |
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| Q |
215 |
catggcaagaagcgtcgtgccataatggcgaaaggcgtgcaaaaaaccctttcaaaaacttccttacttggtaactt |
291 |
Q |
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| T |
2787808 |
catggcaagaagcgtcgtgccataatggcgaaaggcgtgcaaaaaaccctttcaaaaacttccttacttggtaactt |
2787732 |
T |
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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 102 - 291
Target Start/End: Original strand, 19577673 - 19577862
Alignment:
| Q |
102 |
aatcaaatatggaacaaacacaacaagaaattggaatcaaaatctacaacacaacaccgccaccacaagaagccatgggggccgtaacgcagcagccttc |
201 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| ||||||| |||| || ||||||||||| ||||| || | ||| || || ||||||| |
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| T |
19577673 |
aatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaactcctccaccacaagaggccataggcggcgtcacacaccagccttt |
19577772 |
T |
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| Q |
202 |
tgatccaccggaacatggcaagaagcgtcgtgccataatggcgaaaggcgtgcaaaaaaccctttcaaaaacttccttacttggtaactt |
291 |
Q |
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| T |
19577773 |
cgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatccttactcggaaactt |
19577862 |
T |
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