View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_high_17 (Length: 239)
Name: NF18574_high_17
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34127296 - 34127506
Alignment:
| Q |
1 |
ctctataatctcactataattagttcggagaccttcctttgtcgtgatctataatagctctattgcatcaaataccttttatactttacattgattgaat |
100 |
Q |
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| T |
34127296 |
ctctataatctcaatataattagttcggagaactacctttgtcgtgaactataatagctctattgcatcaaataccttgtatactttacattgattgaat |
34127395 |
T |
|
| Q |
101 |
ataccttgatccagtatacaccagagcattggtgctagaaggaggggaatcacttcattcaatcctttctattgtttttccataaattcatcacagtaac |
200 |
Q |
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| T |
34127396 |
ataccttgatccagtatacaccagagcattggtgctagaaggaggggaatcacttcattca---------attgtttttccataaattcatcactgtaac |
34127486 |
T |
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| Q |
201 |
cgtttttctattgtttttcc |
220 |
Q |
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| T |
34127487 |
cgtttttcttttgtttttcc |
34127506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 26283836 - 26283667
Alignment:
| Q |
44 |
gtgatctataatagctctattgcatcaaataccttttatactttacattgattgaatataccttgatccagtatacaccagagcattggtgctagaagga |
143 |
Q |
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| T |
26283836 |
gtgaactataatagctctgtcacattaaaaacctggtatactttttgttgattggatatacctcgatcgagtatacaccagatcattgacgccagaagga |
26283737 |
T |
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| Q |
144 |
ggggaatcacttcattcaatcctttctattgtttttccataaattcatcacagtaaccgtttttctattgttttt |
218 |
Q |
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| T |
26283736 |
ggggaatcacttcattgattcct-----ttggctctccacaaattcatcatcgtaaccgtttttctattgttttt |
26283667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 34570241 - 34570196
Alignment:
| Q |
80 |
tatactttacattgattgaatataccttgatccagtatacaccaga |
125 |
Q |
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| T |
34570241 |
tatactttacattgattgaatatacatcgatccagtacacaccaga |
34570196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 43231935 - 43232006
Alignment:
| Q |
80 |
tatactttacattgattgaatataccttgatccagtatacaccagagcattggtgctagaaggaggggaatc |
151 |
Q |
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| T |
43231935 |
tatactttaagttgattaaatatacctcgatccagtatacaccaaattattggcgctagatggaggggaatc |
43232006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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