View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18574_high_4 (Length: 528)

Name: NF18574_high_4
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18574_high_4
NF18574_high_4
[»] chr4 (2 HSPs)
chr4 (162-523)||(6133605-6133966)
chr4 (19-87)||(6133478-6133548)
[»] chr7 (1 HSPs)
chr7 (180-523)||(20599803-20600146)
[»] chr1 (2 HSPs)
chr1 (393-522)||(47944733-47944862)
chr1 (224-400)||(47944888-47945064)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 162 - 523
Target Start/End: Original strand, 6133605 - 6133966
Alignment:
Q  162 tatattgcttctctttgactcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133605 tatattgcttctctttgactcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttg 6133704  T
Q  262 gtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133705 gtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagat 6133804  T
Q  362 tagttcctctcatcttattgatgacatgtcttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattg 461  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133805 tagttcctctcatcttatagatgacatgtcttcttcttcaatgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattg 6133904  T
Q  462 aatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatgatgatgt 523  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6133905 aatttgaaaattcagacattagggcattttgtgaacgtttatggttcattgtatgatgatgt 6133966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 6133478 - 6133548
Alignment:
Q  19 agcttctccccacaaaa-cgctagtctttga-ctcttacaaacaccaactcacactcagaatcaacaccat 87  Q
    ||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  6133478 agcttctccccacaaaaacactagtctttaaactcttacaaacaccaactcacactcagaatcaacaccat 6133548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 180 - 523
Target Start/End: Original strand, 20599803 - 20600146
Alignment:
Q  180 ctcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatt 279  Q
    |||||||| |||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  20599803 ctcttaccatcatcaaccgatcattatattagaatggaatcaacacctaattttgtgaaaagggtgcttagagaagcacttggcgacgacgttagcgatt 20599902  T
Q  280 tcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttat 379  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||   || |||  ||||||||||||    
T  20599903 tcaaactactggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttat 20600002  T
Q  380 tgatgacatgtcttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagaca 479  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  20600003 tgatgacatgtcttcttcttcaatgatatccttgaggtatactcttcctgagattcttactaatggttcatctcattctttgaatttgaaaattcagaca 20600102  T
Q  480 ttagggcattttgtgaatgtttatggttcattgtatgatgatgt 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20600103 ttagggcattttgtgaatgtttatggttcattgtatgatgatgt 20600146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 393 - 522
Target Start/End: Complemental strand, 47944862 - 47944733
Alignment:
Q  393 tcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttg 492  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |  |||  |||||||||||||| |||||| ||||||    
T  47944862 tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttg 47944763  T
Q  493 tgaatgtttatggttcattgtatgatgatg 522  Q
    ||||||| ||||||||||||| ||||||||    
T  47944762 tgaatgtctatggttcattgtgtgatgatg 47944733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 400
Target Start/End: Complemental strand, 47945064 - 47944888
Alignment:
Q  224 acctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatca 323  Q
    ||||||||| ||||| |||||  |||  ||||||||||||||||| ||||| ||||| || ||  |||| ||||| ||||||||| |||||||||||||     
T  47945064 acctgatttcgtgaagagggttattaaggaagcgcttggtgatgatgttagtgatttgaagctgttggtgtttgcggttcatgctgttattcttgaatct 47944965  T
Q  324 gggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtcttcttcttc 400  Q
    |||||| ||||||||||    ||||||||| ||  |||||||| |||| ||||| ||||||| ||||||||||||||    
T  47944964 gggtttgttcgtgtggacgaggtttcgggtatggcgattagttgctctaatcttgttgatgatatgtcttcttcttc 47944888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University