View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_high_6 (Length: 381)
Name: NF18574_high_6
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 20065747 - 20065400
Alignment:
| Q |
18 |
ctaaaaattagtaggtttatccaaactgatctaatgatatcacgaatgattattttactttacttaaatcggagtaccttatatagtttgagttttaggt |
117 |
Q |
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| T |
20065747 |
ctaaaaattagtgagtttactcaaactgacctaatgatatcacgaatgattattttacttcacttaaatcagagtactttgtatgatttgagttttaggt |
20065648 |
T |
|
| Q |
118 |
ttggacaaattcaacctaaaccgatccatgtatacccctagttgagttatactaatccaactttagaaatttctatatatacatacgaagcacacccatt |
217 |
Q |
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||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20065647 |
ttggacaaacccaatctaaaccgatccacgtatacccctagttgagttatactaatccaactttaaaaatttctatatatacatacgaagcacacccatt |
20065548 |
T |
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| Q |
218 |
ccacctcacatctcaattttctaaacatctttcatcatggaaaatcacaagaaatccccgtcccttagtcttgaaaccaaggacattgtgatcgttaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20065547 |
ccacctcacatctcaattttctaaacatctttcatcatggaaaatcacaagaaatccccgtcccttagtcttgaaaccaaggacattgtgattgttaaac |
20065448 |
T |
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| Q |
318 |
cctccaagcccacaccttctgaaattctttcactttccaccattgaca |
365 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20065447 |
cctccatgcccacaccttctgaaattctttcactttccaccattgaca |
20065400 |
T |
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