View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_low_1 (Length: 818)
Name: NF18574_low_1
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 759; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 20 - 794
Target Start/End: Original strand, 523244 - 524018
Alignment:
| Q |
20 |
tatactatagtctgcatctttgtgaacatccatggtaactttcctttttcataatagaacatgtgtagactgaatgaagtgtctttgtggatttcatcaa |
119 |
Q |
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| T |
523244 |
tatactatagtctgcatctttgtgaacatccatggtaactttcctttttcataatagaacatgtgtagactgaatgaagtgtctttgtggatttcatcaa |
523343 |
T |
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| Q |
120 |
ttaattgagtttctaaatttgcaggtctgaatatatacttctggctctccttcatccctgcaattgtatgtataataatctgttcatgcttttcaataaa |
219 |
Q |
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| T |
523344 |
ttaattgagtttctaaatttgcaggtctgaatatatacttctggctctccttcatccctgcaattgtatgtataataatctgttcatgcttttcaataaa |
523443 |
T |
|
| Q |
220 |
attaaaatgaagcagttttttgaaaatcattatggttaacatatgatttctctacgcgtaaaagcttgtgatgttaataggtacaaaacttcaacatgtt |
319 |
Q |
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| T |
523444 |
attaaaatgaagcagatttttgaaaatcattatggttaacatatgatttctctacgcgtaaaagcttgtgatgttaataggtacaaaacttcaacatgtt |
523543 |
T |
|
| Q |
320 |
gtatccattttagcacttgaaatctggcagcagcagggtcctagtgccagaacacaagtaaagccgcgcgatggtcttttttggttcaaaaaaccagata |
419 |
Q |
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| T |
523544 |
gtatccattttagcacttgaaatctggcagcagcagggtcctagtgccagaacacaagtaaagccgcgcgatggtcttttttggttcaaaaaaccagata |
523643 |
T |
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| Q |
420 |
tattgttatggatcatacagtttgtgatatttcaggtaaaatatgcaatgcatttgtaattatttggtaaccgcgtcattcttcacagttgctttcctat |
519 |
Q |
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| T |
523644 |
tattgttatggatcatacagtttgtgatatttcaggtaaaatatgtaatgcatttataattatttggtaaccgcgtcattcttcacagttgctttcctat |
523743 |
T |
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| Q |
520 |
ttgtccttattttctctattgttcatgcagaatgcctttgaaatggcctcatttatatggacattggtaagatttaaatttttcatgaatgtatctatgc |
619 |
Q |
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| T |
523744 |
ttgtccttattttctctattgttcatgcagaatgcctttgaaatggcctcatttatatggacattggtaagatttaaatttttcatgaatgtatctatgc |
523843 |
T |
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| Q |
620 |
ctacatttgttccattacttgaattaatctgcttaaggccttctttcattctttgatcattttttcctgtatgactatgtctagtggggatttaaagaaa |
719 |
Q |
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| T |
523844 |
ctacatttgttccattacttgaattaatctgcttaaggccttctttcattctttgatcattttttcctgtatgtctatgtctagtggggatttaaagaaa |
523943 |
T |
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| Q |
720 |
aatcatgcttcatgagacaccattacatgatcatcattcggttgacatcagggttagtttcaatgtttcatctct |
794 |
Q |
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| T |
523944 |
aatcatgcttcatgagacaccattacatgatcatcattcggttgacatcagggttagtttcaatgtttcatctct |
524018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 3298187 - 3298250
Alignment:
| Q |
297 |
taggtacaaaacttcaacatgttgtatccattttagcacttgaaatctggcagcagcagggtcc |
360 |
Q |
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| T |
3298187 |
taggtacaaaacttcaacttgttgtgtctactttagcacttgaaatcagggagtagcagggtcc |
3298250 |
T |
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