View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_low_18 (Length: 240)
Name: NF18574_low_18
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28814836 - 28815056
Alignment:
| Q |
1 |
atacaacgcaacaaacttatccaatttctaccaaaatctaaacgcaactttgttagacataaaatcacaagtacgaaatgatagcaagcattttgctacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
28814836 |
atacaacgcaacaaacttatccaatttctaccaaaatctaaacgcaactttgttagacttgaaatcacaagtacgaaatgatagcaagcattttgctacg |
28814935 |
T |
|
| Q |
101 |
gcacaatcagctagaggagcaaatcctgtttatgctttgtttcagtgtaggaattatctctctaattctgattgtgctgcttgcctcgccgtcgccgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28814936 |
gcacaatcagctagaggagcaaatcctgtttatgctttgtttcagtgtaggaattatctctctaattctgattgtgctgcttgcctcgccgtcgccgacg |
28815035 |
T |
|
| Q |
201 |
cacaaattcggaattgctccg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
28815036 |
cacaaattcggaattgctccg |
28815056 |
T |
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