View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_low_2 (Length: 677)
Name: NF18574_low_2
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 54022535 - 54022025
Alignment:
| Q |
18 |
gtgtattcacaattaagtttaatttggtttgattttataatggtatgtgcatgggtgcagagtgaagtggactttttggggaagttctctcatccgaatc |
117 |
Q |
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| T |
54022535 |
gtgtattcacaattaactttaatttggtttgattttataacggtatgtgcatgggtgcagagtgaagtggactttttggggaagttctctcatccgaatc |
54022436 |
T |
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| Q |
118 |
ttgttaaactacttggctactgttgggaggaaaatcaattcctgctggtttacgagtacatgcaaaagggcagcttggaaagccacctcttcagaagtac |
217 |
Q |
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| T |
54022435 |
ttgttaaactacttggctactgttgggaggaaaatcaattcctgctggtttacgagtacatgcaaaagggcagcttggaaagccacctcttcagaagtac |
54022336 |
T |
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| Q |
218 |
gaaattaattaatcaatagtatgtattagtattaagttaatgaatgaatgttgtgttgtttggcaggccctgaaccactgtcttgggaaataaggttgaa |
317 |
Q |
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| T |
54022335 |
gaaattaattaatcaatagtatgtattagtattaagttaatgaatgg----tgtgttgtttggcaggccctgaaccactgtcttgggaaataaggttgaa |
54022240 |
T |
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| Q |
318 |
gatagccataggagctgctagaggtttgggtttcttacacacttcagaaaaatcagttatatatagagacttcaagtcttcaaacattttgcttgatggg |
417 |
Q |
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| T |
54022239 |
gatagccataggagctgctagaggtttgggtttcttacacacttcagaaaaatcagttatatatagagacttcaagtcttcaaacattttgcttgatggg |
54022140 |
T |
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| Q |
418 |
gtaagaatgtaataaagttcattttttgtatgtatgtgatgatttttgaataaaaggggaatcaattattgagacccaaagaatgttagttagtacatgt |
517 |
Q |
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| T |
54022139 |
gtaagaatgtaataaagttcattttttgtatgtatgtgatgatttttgaataaaaggggaatcaactattgagacccaaagaatgt----tagtacatgt |
54022044 |
T |
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| Q |
518 |
tctgttacaactttattga |
536 |
Q |
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| T |
54022043 |
tctgttacaacttttttga |
54022025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 557 - 664
Target Start/End: Complemental strand, 54022031 - 54021924
Alignment:
| Q |
557 |
tttttgaataacaggatttcaatgcaaagttgtctgactttggattggcaaagcttggacctgtcaacggtagatcacatgtaaccacacggatcatggg |
656 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022031 |
tttttgaataacaggatttcaatgcaaagttgtctgactttggattggcaaagcttggacctgtcaacggtagatcacatgtaaccacacggatcatggg |
54021932 |
T |
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| Q |
657 |
tacctatg |
664 |
Q |
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| T |
54021931 |
tacctatg |
54021924 |
T |
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