View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18574_low_3 (Length: 669)
Name: NF18574_low_3
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_low_3 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Complemental strand, 3449147 - 3448507
Alignment:
| Q |
8 |
tagcatagggtattcgtatcgtggatattttggaataatgggaatcannnnnnnnnnnnnnnnngttgagggaaatgggaatcatatttaaccatcacac |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3449147 |
tagcatagggtatttgtatcgtggatattttggaataatgggaatcattttttttttgtt----gttgagggaaatgggaatcatatttaaccatcacac |
3449052 |
T |
|
| Q |
108 |
acttatatatagggtgattaaaacaaaccatacacgttgctgcatattggnnnnnnnactgtatctgaagtcttctcaccagttttagaacaagagccta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3449051 |
acttatatatagggtgattaaaacaaaccatacacgttgctgcatattggtttttt-actgtatctgaagtcttctcaccagttttagaacaagagccta |
3448953 |
T |
|
| Q |
208 |
ataaggcattggaagaacaacaagccaacacatagttcaggtagtgttatccgtttctctttatgtttcataatcacatgtatcctaatgttatttaggt |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3448952 |
ataaggcattggaataacaacaagccaacacatagttcaggtagtgttatccgtttctctttatgtttcagaatcacatgtatcctaatgttatttaggt |
3448853 |
T |
|
| Q |
308 |
atcgtgtttattcttgatgtttgtaacataattatttaactaataagtttctacaccatagtatgtagtttttggttacatcatagtatatgagaaaaca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3448852 |
atcgtgtttattcttgatgtttgtaacataattatttaactaataagtttctacaccatagtatgtagtttttggttacatcatagtatatgagaaaaca |
3448753 |
T |
|
| Q |
408 |
tgtcttatataattgattattaaattaacttcaaccagtggtacagggaatgccctcatatttagtttattgggtggttgaaattaatgtcgagaagtta |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3448752 |
tgtcttatataattgattattaaattaacttcaaccagt-gtatagggcatgccctcatatttagtttattgggtggttgaaattaatgtctagaagtta |
3448654 |
T |
|
| Q |
508 |
tccatgattagagttgtttgtttctctctaattttggtgtgaaccgtaaatcctatttttgaatttaaggcattcgattagggttttgtgtgtgcaattt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3448653 |
tccatgattagagttgtttgtttctctctaattttggtgtgaaccgtaaatcctatttttgaatttaaggcattcgattagggttttgtgtgtgcaattt |
3448554 |
T |
|
| Q |
608 |
cgataagtttgttgcctaaattcttggtaaacaaaatattggtttgt |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3448553 |
cgataagtttgttgcctaaattcttggtaaacaaaatattggtttgt |
3448507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 193 - 357
Target Start/End: Original strand, 226760 - 226936
Alignment:
| Q |
193 |
tagaacaagagcctaataaggcattggaagaacaacaagccaacacatagttcaggtagt-gttatccgtttctctttatgtttcataatca----catg |
287 |
Q |
| |
|
|||||||||||| ||| ||| ||||| |||| ||||| ||||||| ||| |||||||| | ||||| || ||||||||||||||| ||||| |||| |
|
|
| T |
226760 |
tagaacaagagcttaaaaagacattgaaagatcaacaggccaacatataattcaggtattctttatcggtctctctttatgtttcagaatcactctcatg |
226859 |
T |
|
| Q |
288 |
tatcctaatgttatttaggtatcg-------tgtttattcttgatgtttgtaacataattatttaactaataagttt |
357 |
Q |
| |
|
|||||||||||||| | ||||| | ||||||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
226860 |
tatcctaatgttatcttggtattgtgtttattgtttattcttgacgtttgtaacataattatttgactattaagttt |
226936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 193 - 396
Target Start/End: Complemental strand, 19443970 - 19443752
Alignment:
| Q |
193 |
tagaacaagagcctaataaggcattggaagaacaacaagccaacacatagttcaggtagtgtt-atccgtttctctttatgtttcataatcaca----tg |
287 |
Q |
| |
|
|||| ||||||||||| ||| ||||| || | |||||| |||||||||||||||||||| || |||| | ||||||||||||||| || |||| || |
|
|
| T |
19443970 |
tagagcaagagcctaaaaagacattgaaaaatcaacaaaccaacacatagttcaggtagactttatccatctctctttatgtttcagaaccacagtcatg |
19443871 |
T |
|
| Q |
288 |
tatcctaatgttat----ttag------gtatcgtgtttattcttgatgtttgtaacataattatttaactaataagtttctacaccatagtatgtagtt |
377 |
Q |
| |
|
|||||||||||||| |||| || | ||||||||||||| || ||||||||||||||||||||| ||||||||| || |||||| | || | |
|
|
| T |
19443870 |
tatcctaatgttatattattagtattgtgtttactgtttattcttgacgtctgtaacataattatttaactattaagtttctgcatcatagtgtatatat |
19443771 |
T |
|
| Q |
378 |
tttggttacatcatagtat |
396 |
Q |
| |
|
||| | ||||||||||||| |
|
|
| T |
19443770 |
ttttgctacatcatagtat |
19443752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 19437741 - 19437657
Alignment:
| Q |
312 |
tgtttattcttgatgtttgtaacataattatttaactaataagtttctacaccatagtatgtagtttttggttacatcatagtat |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| | || | |||||| | ||||| ||||||||||||||| |
|
|
| T |
19437741 |
tgtttattcttgacgtttgtaacataattatttaactattaagtttatgcatcgtagtatttttttttttgttacatcatagtat |
19437657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 34658571 - 34658656
Alignment:
| Q |
193 |
tagaacaagagcctaataaggcattggaagaacaacaagccaacacatagttcaggtagt-gttatccgtttctctttatgtttca |
277 |
Q |
| |
|
|||| ||||||||||| ||| || | |||| |||||||||||||||||||||||||||| ||| || | ||||||||||||||| |
|
|
| T |
34658571 |
tagagcaagagcctaaaaagacaccgaaagatcaacaagccaacacatagttcaggtagtctttacccatctctctttatgtttca |
34658656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University