View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18574_low_5 (Length: 451)

Name: NF18574_low_5
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18574_low_5
NF18574_low_5
[»] chr3 (5 HSPs)
chr3 (19-434)||(3139060-3139475)
chr3 (63-352)||(3156856-3157145)
chr3 (60-384)||(3167122-3167446)
chr3 (78-383)||(2022692-2022997)
chr3 (391-434)||(3156792-3156835)
[»] chr8 (3 HSPs)
chr8 (23-348)||(23851971-23852296)
chr8 (23-352)||(23856537-23856868)
chr8 (370-434)||(23852300-23852364)
[»] chr7 (3 HSPs)
chr7 (214-389)||(7491113-7491288)
chr7 (214-389)||(7498834-7499009)
chr7 (225-434)||(9011911-9012123)
[»] chr5 (5 HSPs)
chr5 (212-309)||(1760106-1760203)
chr5 (212-313)||(1724466-1724567)
chr5 (212-312)||(1739055-1739155)
chr5 (227-313)||(1763480-1763566)
chr5 (212-296)||(1744398-1744482)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 3139475 - 3139060
Alignment:
Q  19 atcagacaaacctattgattttttgaagttaccgaatgacaattcagtttccgtgtcgaaggtgcaagagcacaacttttttggtcctattcgagttggt 118  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3139475 atcagacaaacctattgattttttgaagctatcgaatgacaattcggtttccgtgtcgaagatgcaagagcacaacttttttggccctattcgagttggt 3139376  T
Q  119 tcatcttcttctttacctaataataacaatcaagggaaagatgcgaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttttgca 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3139375 tcatcttcttctttacctaataacaacaatcaagggaaagatgcgaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttttgca 3139276  T
Q  219 agagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtgg 318  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  3139275 agagacaattttctacttcacaggcgttgggaggacatcagaacgcacataaggcggaacgggcattagaaaagcaacgtcaacaaaggtatgatggtag 3139176  T
Q  319 tgctttaagttttgggcaaccttactttaatccttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgag 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3139175 tgctttaagttttgggcagccttactttaatccttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatcagag 3139076  T
Q  419 tcaatgattcaaaaac 434  Q
    ||||||||||||||||    
T  3139075 tcaatgattcaaaaac 3139060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 63 - 352
Target Start/End: Complemental strand, 3157145 - 3156856
Alignment:
Q  63 cagtttccgtgtcgaaggtgcaagagcacaacttttttggtcctattcgagttggttcatcttcttctttacctaataataacaatcaagggaaagatgc 162  Q
    ||||| ||||||||||||||||||||||||| ||||| || || |||| | |||||||||| |||| ||| |||||| ||||||||||||| |||||||     
T  3157145 cagttcccgtgtcgaaggtgcaagagcacaattttttcggccccattcaaattggttcatcgtcttgttttcctaatgataacaatcaaggaaaagatga 3157046  T
Q  163 gaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttttgcaagagacaattttctacttcacaagcgttgggaggacatcagaac 262  Q
    ||||| |  |||| |||||| ||| ||| ||  |||||| |  ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  3157045 gaacatcaatgaagagaagaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcacaagcgttgggaggacaccagaac 3156946  T
Q  263 gcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatcct 352  Q
    || |||||||||||||| || ||||||||||||||  |||||||||||||||   |||||| |||||| |||||| |||||||| |||||    
T  3156945 gctcataaggcggaacgtgctttagaaaagcaacggaaacaaaggtatgatgacagtgcttcaagtttggggcaatcttacttttatcct 3156856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 60 - 384
Target Start/End: Original strand, 3167122 - 3167446
Alignment:
Q  60 attcagtttccgtgtcgaaggtgcaagagcacaacttttttggtcctattcgagttggttcatcttcttctttacctaataataacaatcaagggaaaga 159  Q
    ||||||||  || |||| |||||||||| ||||||||||| || ||||||| || ||||||||| | || ||| | |||||| |||||| ||||||||||    
T  3167122 attcagttctcgggtcggaggtgcaagaacacaactttttcggccctattcaaggtggttcatcatatttttttcgtaataacaacaatgaagggaaaga 3167221  T
Q  160 tgcgaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttttgcaagagacaattttctacttcacaagcgttgggaggacatcag 259  Q
    || |||||||  ||   |||| | ||||||| ||  |||||| |  || | ||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  3167222 tgagaacaacaatgctgagaacaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcag 3167321  T
Q  260 aacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatctta 359  Q
    || || |||||||| ||||| || |||||||| |||||| |||||| ||||||   ||||| |||  |||| ||||||||||||||||| |||||| |||    
T  3167322 aatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaagtatgaaaatggtgtttttggtttagggcaaccttactttaacccttatttta 3167421  T
Q  360 gttatccaagtactctttttacacc 384  Q
    ||||||||| |||||||||||||||    
T  3167422 gttatccaaatactctttttacacc 3167446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 78 - 383
Target Start/End: Original strand, 2022692 - 2022997
Alignment:
Q  78 aggtgcaagagcacaacttttttggtcctattcgagttggttcatcttcttctttacctaataataacaatcaagggaaagatgcgaacaacggtgaaaa 177  Q
    |||||||||||||| | ||||||||  || ||| ||| ||||| || |||  ||| |||| ||| |||||| || ||||| | | |||||||| |||| |    
T  2022692 aggtgcaagagcacgatttttttggcacttttcaagtcggttcctcgtctcgttttcctagtaacaacaatgaaaggaaaaacgagaacaacgatgaaga 2022791  T
Q  178 gaagacttcagatccagtgtctttcttgtgctctttttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaa 277  Q
    ||||| ||||||| ||  |||||| |  || | ||||||||||||| ||||||||||||| ||||| || |||||||| ||||| || |||||||| |||    
T  2022792 gaagaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttcgcaagccttaggaggacaccagaatgcccataaggctgaa 2022891  T
Q  278 cgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatccaagtactcttt 377  Q
    ||  |||||||||| |||||| |||||||||||||  ||||||||||  |||| ||||||||| ||||||| |||||| |||||||||||||||||||||    
T  2022892 cgtacgttagaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttattttagttatccaagtactcttt 2022991  T
Q  378 ttacac 383  Q
    ||||||    
T  2022992 ttacac 2022997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 3156835 - 3156792
Alignment:
Q  391 ttataggtcacttggggttagatccgagtcaatgattcaaaaac 434  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||    
T  3156835 ttataggtcactcggggtcagaaccgagtcaatgattcaaaaac 3156792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 23851971 - 23852296
Alignment:
Q  23 gacaaacctattgattttttgaagttaccgaatgacaattcagtttccgtgtcgaaggtgcaagagcacaacttttttggtcctattcgagttggttcat 122  Q
    |||||||||||||||||| ||||| || | || ||  |||||||| ||||||| |||||| |||||||||| |||||||| ||||||||| |||||||||    
T  23851971 gacaaacctattgattttatgaagctatcaaaagaagattcagttcccgtgtcaaaggtgaaagagcacaatttttttggccctattcgaattggttcat 23852070  T
Q  123 cttcttctttacctaataataacaatcaagggaaagatgcgaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttttgcaagag 222  Q
    | |||| ||| ||||   | ||||||||||| ||||||| ||||| |  |||| |||||| ||||||| ||   || || |  ||||| ||||| |||||    
T  23852071 cgtcttgttttcctaccgacaacaatcaaggaaaagatgagaacatcaatgaagagaagaattcagattcaagatccttttcatgctccttttgtaagag 23852170  T
Q  223 acaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgct 322  Q
     |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||  | ||||||||||||||  ||||||||||||||| ||||| |    
T  23852171 gcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatgatgatggtgtt 23852270  T
Q  323 ttaagttttgggcaaccttactttaa 348  Q
    ||| |||| |||||| ||||||||||    
T  23852271 ttaggtttagggcaatcttactttaa 23852296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 23856537 - 23856868
Alignment:
Q  23 gacaaacctattgattttttgaagttaccgaatgacaattcagtttccgtgtcgaaggtgcaagagcacaactttttt-ggtcctattcgagttggttca 121  Q
    |||||||||||||||||  ||||| || | || |||  |||||||  | |||| ||| |||||||| |||| |||||| || ||||||||| ||||||||    
T  23856537 gacaaacctattgatttcatgaagctatctaaagacggttcagttctcatgtcaaagttgcaagagtacaattttttttggccctattcgaattggttca 23856636  T
Q  122 tcttcttctttacctaataataacaatcaagggaaagatgcgaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttt-tgcaag 220  Q
    || |||| ||| ||||||   ||||||||||| ||||||| ||||| |  | || || ||| || |||| ||   || || |  |||| |||| || |||    
T  23856637 tcgtcttgttttcctaatgccaacaatcaaggaaaagatgagaacatcaataaagaggagaatttagattcaagatccttttcatgcttttttgtgtaag 23856736  T
Q  221 agacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtg 320  Q
    ||||| | ||||||||||||| ||||||||||||| |||||||| |||||| ||||||   | ||||||||||||||  ||||||| ||||||| ||||     
T  23856737 agacactattctacttcacaatcgttgggaggacaccagaacgctcataagacggaacatactttagaaaagcaacgcaaacaaagatatgatgatggta 23856836  T
Q  321 ctttaagttttgggcaaccttactttaatcct 352  Q
    ||||| ||||   | || ||||||||||||||    
T  23856837 ctttaggtttaaagaaatcttactttaatcct 23856868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 23852300 - 23852364
Alignment:
Q  370 tactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaac 434  Q
    ||||||||||  |||||||  |||||||||| | ||| ||||| |||||||||||||||||||||    
T  23852300 tactctttttcgaccttatgattataggtcaatcgggattagaaccgagtcaatgattcaaaaac 23852364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 389
Target Start/End: Complemental strand, 7491288 - 7491113
Alignment:
Q  214 ttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgat 313  Q
    ||||||| | |||||||||||||  ||||  || ||||| ||||| || || |||||||||||||| ||||| ||||| |||||| || |||||||||||    
T  7491288 ttgcaaggggcaattttctactttccaaggcttaggagggcatcaaaatgcccataaggcggaacgtgcgttggaaaaacaacgtaaagaaaggtatgat 7491189  T
Q  314 ggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatccaagtactctttttacaccttata 389  Q
    | |||||||||| |||| |||||| || ||||||| |||||| | | |||| | ||||||||||||||||||||||    
T  7491188 gctggtgctttaggtttagggcaatctcactttaaaccttatttcaattattctagtactctttttacaccttata 7491113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 389
Target Start/End: Complemental strand, 7499009 - 7498834
Alignment:
Q  214 ttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgat 313  Q
    ||||||| | |||||||||||||  ||||  || ||||| ||||| || || |||||||| ||||| || || ||||| ||||   || |||||||||||    
T  7499009 ttgcaaggggcaattttctactttccaaggcttaggagggcatcaaaatgcccataaggcagaacgtgcattggaaaaacaactaaaagaaaggtatgat 7498910  T
Q  314 ggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatccaagtactctttttacaccttata 389  Q
    | |||||||||| |||| |||||| || ||||||| |||||| | | |||| | ||||||||||||||||||||||    
T  7498909 gctggtgctttaggtttagggcaatctcactttaaaccttatttaaattattctagtactctttttacaccttata 7498834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 434
Target Start/End: Complemental strand, 9012123 - 9011911
Alignment:
Q  225 aattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgcttt 324  Q
    ||||||||||| ||||||||||||| || || || || || ||||    |||||| || || ||||||||| |||||||||||||||||     | ||||    
T  9012123 aattttctactgcacaagcgttgggtgggcaccaaaatgcccatagaaaggaacgtgcatttgaaaagcaatgtcaacaaaggtatgatcaaaatccttt 9012024  T
Q  325 aagttttgggcaacct---tactttaatccttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtca 421  Q
    | |||| |||||||||   |  ||||| |||||| |||||||||  |||||||||||||||||||||| |||||||  ||  |||||||||   || |||    
T  9012023 aggtttggggcaacctccttcttttaacccttattttagttatcgtagtactctttttacaccttataattataggctacccggggttagaatggaatca 9011924  T
Q  422 atgattcaaaaac 434  Q
    |||||||||||||    
T  9011923 atgattcaaaaac 9011911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 1760106 - 1760203
Alignment:
Q  212 ttttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggta 309  Q
    |||||||||||| ||||| |||||||||| ||||||||||| || || || ||  ||||||||||||| || ||||||||||||||| ||||||||||    
T  1760106 ttttgcaagagaaaatttactacttcacaggcgttgggagggcaccaaaatgcttataaggcggaacgtgcattagaaaagcaacgtaaacaaaggta 1760203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 1724466 - 1724567
Alignment:
Q  212 ttttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatg 311  Q
    |||||||||||| |||||||||||||||| ||||| ||||| || || || || |||||||| ||||| || ||| ||||||||||| ||| ||||||||    
T  1724466 ttttgcaagagaaaattttctacttcacaggcgttaggagggcaccaaaatgctcataaggcagaacgtgcattaaaaaagcaacgtaaactaaggtatg 1724565  T
Q  312 at 313  Q
    ||    
T  1724566 at 1724567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 1739055 - 1739155
Alignment:
Q  212 ttttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatg 311  Q
    ||||||||| || ||||||||||||| |||||||| || ||||| || ||||| |||||||| ||||| |||||  ||||||||| | ||||||||||||    
T  1739055 ttttgcaagggaaaattttctacttcgcaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcgttgcaaaagcaacttaaacaaaggtatg 1739154  T
Q  312 a 312  Q
    |    
T  1739155 a 1739155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 1763566 - 1763480
Alignment:
Q  227 ttttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgat 313  Q
    ||||||||||||||  |||| ||||| ||||| || || |||||||||||||  || ||||||||||||||| ||||||||||||||    
T  1763566 ttttctacttcacatacgttaggagggcatcaaaaagctcataaggcggaacatgcattagaaaagcaacgtaaacaaaggtatgat 1763480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 1744398 - 1744482
Alignment:
Q  212 ttttgcaagagacaattttctacttcacaagcgttgggaggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaac 296  Q
    ||||||||| || |||||||||||||||||||||| || ||||| || ||||| |||||| ||||||| || ||| |||||||||    
T  1744398 ttttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataagacggaacgtgcattacaaaagcaac 1744482  T

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