View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18574_low_9 (Length: 326)
Name: NF18574_low_9
Description: NF18574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18574_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 31241643 - 31241349
Alignment:
| Q |
16 |
atgtggaaagtcacaatgaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcattcttctgaatccaatat |
115 |
Q |
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| T |
31241643 |
atgtggaaagtcacaataaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcatacttctgaatccaatat |
31241544 |
T |
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| Q |
116 |
gtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31241543 |
gtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactaaa |
31241444 |
T |
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| Q |
216 |
gattcacatttgtagtattactctgtagattattatatatatgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaat |
310 |
Q |
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| T |
31241443 |
gattcacatttgtagtattactatgtagattattatatatatgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaat |
31241349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 31232673 - 31232383
Alignment:
| Q |
16 |
atgtggaaagtcacaatgaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcattcttctgaatccaatat |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31232673 |
atgtggaaagtcacaataaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcatacttctgaatccaatat |
31232574 |
T |
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| Q |
116 |
gtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactcaa |
215 |
Q |
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| T |
31232573 |
gaaaattaataaaagctaatatcaatggacaagaattttccagcagagagtacttgaaccaaatgaataaggtaca--atattaaccatctactactcaa |
31232476 |
T |
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| Q |
216 |
gattcacatttgtagtattactct--gtagattattata-tatatgctagatgttggtcctctaattcattttaattggtgccataccatttc |
305 |
Q |
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| T |
31232475 |
gactcacatttgtagtattactttaatttgttgattacactatatgctagatattagtcttctaattcattttaattggtgttataccatttc |
31232383 |
T |
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