View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_high_11 (Length: 600)
Name: NF18575_high_11
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 11 - 576
Target Start/End: Complemental strand, 42448795 - 42448226
Alignment:
| Q |
11 |
cacagatgtatactagttaagcctgtccggctgacccgtttaagtttatttttacttatttctttgctagacaaataatatctgggtttattttaatggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42448795 |
cacagatgtatactagttaagcctgtccggctgacccgtttaagtttatttttacttatttctttgctagacaaataatatctgggtttattttaatggt |
42448696 |
T |
|
| Q |
111 |
gaatttgtttactgttagaga----aacctaacctattgtgagattatgttgaatttaacattactctattttttgacattctctcaatatatatatggt |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42448695 |
gaatttgtttactgttagagatcgaaacctaacctattgtgagattatgttgaatttaacattactctattttttgacatcctctcaatatatatatggt |
42448596 |
T |
|
| Q |
207 |
gttaagtttttgttttgaaaaaacaaaattttattaaactgcaccaaaaccattcaatattgatgcaatagtatcataacaaaagagttctagtaaagtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42448595 |
gttaagtttttgttttgaaaaaacaaaattttattaaactgcaccaaaaccattcaatattgatgcaatagtatcataacaaaagagttctagtaaagtt |
42448496 |
T |
|
| Q |
307 |
aaatcctgggcctaaacaatttacactacaccaaaaaagcaaacaatatgttagcatnnnnnnntgattcagttcttgttcttccaagaatcaagaacag |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42448495 |
aaatcctgggcctaaacaatttacactacaccaaaaaagcaaacaatatgttagcataaaaaaatgattcagttcttgttcttccaagaatcaagaacag |
42448396 |
T |
|
| Q |
407 |
cttacaacttctccactttgttaatactttatttgtctcattagttatgaaggactataatttgcctcattcaaggataatgcttttgttttttaaactt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42448395 |
cttacaacttctccactttgttaatactttatttgtctcattagttatgaaggactataatttgcctcattcaaggataatgcttttgttttttatactt |
42448296 |
T |
|
| Q |
507 |
ctctttctcaatattcaatttttcgatcttcctggaagtgtaggccaattgagagatgtctcttaatttt |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42448295 |
ctctttctcaatattcaatttttcgatcttcctggatgtgtaggccaattgagagatgtctcttaatttt |
42448226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University