View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_14 (Length: 510)
Name: NF18575_high_14
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 34712127 - 34712617
Alignment:
| Q |
1 |
ttaaataagtcattaaaatacaaaacctacattatatcatagagtaagggaggggaggg-atggggagagagagatttgaattatggtatggtaataact |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
34712127 |
ttaaataagtcattaaaatacaaaacctacattatatcatagagtaagggaggggaggggatggggagagagagatttgaattatggta-----ataact |
34712221 |
T |
|
| Q |
100 |
ttcatcccgttatctaaatcttgatcacatgttgtacttctacagaatatttcattcgatcatttagcttaattgtagtttcaactcagtttttgtttac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34712222 |
ttcatcccgttatctaaatcttgatcacatgttgtacttctacagaatatttcattcgatcatttagcttaattgtggtttcaactcagtttttgtttac |
34712321 |
T |
|
| Q |
200 |
atcatcctactaaccttcattttctaaccacttctaggatgatgttaattttgagannnnnnn-agcagtagaggatataatttttattttgatgaagtc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34712322 |
atcatcctactaaccttcattttctaaccacttctaagatgatgttaattttgagattttttttaccagtagaggatataatttttattttgatgaagtc |
34712421 |
T |
|
| Q |
299 |
taaatgttctttcgtagagaatataattcttattttgatgtagtttgaatgtcttttcaaatgccaaacaagtagttatccattttgaatgactagcttc |
398 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712422 |
tgaatgttctttcgtagagaatataattcttattttgatgcagtttgaatgtcttttcaaatgccaaacaagtagttatccattttgaatgactagcttc |
34712521 |
T |
|
| Q |
399 |
taaactatgttatgtggttatgttagtaaacgagaagtaaatgttggtttaataatgtaaattttttcaaaccctaacaaactaacttgacaaaaa |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712522 |
taaactatgttatgtggttatgttagtaaacgagaagtaaatgttggtttaataatgtaaattttttcaaaccctaacaaactaacttgacaaaaa |
34712617 |
T |
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