View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_high_21 (Length: 397)

Name: NF18575_high_21
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_high_21
NF18575_high_21
[»] chr8 (11 HSPs)
chr8 (174-394)||(10404856-10405066)
chr8 (17-94)||(10404260-10404337)
chr8 (179-277)||(38082195-38082294)
chr8 (179-261)||(15081454-15081535)
chr8 (179-277)||(2262628-2262725)
chr8 (213-261)||(9295250-9295298)
chr8 (209-277)||(22512155-22512224)
chr8 (189-273)||(12310755-12310838)
chr8 (196-277)||(18180792-18180873)
chr8 (214-277)||(22921959-22922023)
chr8 (189-253)||(37490848-37490910)
[»] chr1 (9 HSPs)
chr1 (179-275)||(50005237-50005332)
chr1 (196-276)||(45085645-45085726)
chr1 (189-270)||(28260269-28260349)
chr1 (212-261)||(13192935-13192984)
chr1 (196-277)||(40804558-40804640)
chr1 (193-270)||(11923788-11923863)
chr1 (220-280)||(12486331-12486392)
chr1 (213-261)||(50335811-50335860)
chr1 (198-277)||(50857553-50857634)
[»] chr6 (4 HSPs)
chr6 (179-261)||(27142601-27142682)
chr6 (198-277)||(2339157-2339237)
chr6 (193-269)||(8568707-8568781)
chr6 (214-280)||(19474728-19474795)
[»] chr4 (7 HSPs)
chr4 (179-277)||(54239490-54239587)
chr4 (179-277)||(15634545-15634644)
chr4 (200-277)||(38223136-38223213)
chr4 (213-254)||(18490424-18490465)
chr4 (198-277)||(13085201-13085280)
chr4 (193-261)||(34943575-34943642)
chr4 (186-277)||(6659439-6659531)
[»] chr2 (6 HSPs)
chr2 (196-271)||(5841205-5841278)
chr2 (198-277)||(8781414-8781493)
chr2 (186-277)||(27952427-27952520)
chr2 (186-277)||(27956263-27956356)
chr2 (197-277)||(33655525-33655608)
chr2 (244-277)||(44675330-44675363)
[»] chr7 (5 HSPs)
chr7 (212-273)||(32052957-32053018)
chr7 (187-277)||(22572497-22572585)
chr7 (196-280)||(4303347-4303433)
chr7 (219-277)||(32936869-32936926)
chr7 (244-277)||(31577291-31577324)
[»] chr5 (6 HSPs)
chr5 (212-279)||(15385061-15385128)
chr5 (179-277)||(35160836-35160932)
chr5 (213-277)||(36844439-36844503)
chr5 (193-270)||(7775315-7775390)
chr5 (179-277)||(19677239-19677338)
chr5 (186-277)||(40778895-40778988)
[»] scaffold0251 (1 HSPs)
scaffold0251 (180-277)||(8264-8361)
[»] scaffold0154 (1 HSPs)
scaffold0154 (226-277)||(28711-28762)
[»] chr3 (5 HSPs)
chr3 (213-273)||(1151119-1151179)
chr3 (242-277)||(20398508-20398543)
chr3 (186-277)||(4580453-4580543)
chr3 (213-277)||(5128824-5128889)
chr3 (244-277)||(43304069-43304102)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 8e-74; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 174 - 394
Target Start/End: Original strand, 10404856 - 10405066
Alignment:
Q  174 ccatcatttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 273  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||    
T  10404856 ccatcatttaaccagagctttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatta--------tggtggattccgaaaaccctt 10404947  T
Q  274 atttaatccgtttatttttagatttagcgcttgctaatttctgcgtcatattattgtcattattttgactcggttccaaccttattagttaacttgtgta 373  Q
    |||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||     
T  10404948 atttaatggatttatttttaggtttagcgcttgctaatttctgcgtcatattattgtcattattttgactcggttccaaccttattagt--acttatgtg 10405045  T
Q  374 atgtcctcgtgagcttagctc 394  Q
    |||||||||||| ||||||||    
T  10405046 atgtcctcgtgaacttagctc 10405066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 10404260 - 10404337
Alignment:
Q  17 agttcataatactttttgataatctaaatagggttcttttatggtaccaacttaaaaaatagggattggtctcgatat 94  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10404260 agttcataatactttttgataatctaaatagggttctttcatggtaccaacttaaaaaatagggattggtctcgatat 10404337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 38082294 - 38082195
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaat-aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| |  ||||||||||||    
T  38082294 atttaaacataactttcgtagcctaagaggcacttttttcattcaataaaaattatcgagaacttttctcaattctgatagattcctgaaacccttattt 38082195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 15081454 - 15081535
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 261  Q
    |||||| || ||||||||||| |||||||||| ||||| | ||||||||||||||||||||| |||||||||||| |||||||    
T  15081454 atttaaacaaaactttcgtagtctaagaggcagtttttcc-ttcaataaaattatcgagaacttttctcaattcttgtggatt 15081535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 2262628 - 2262725
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||| || ||||||||||| |||||| ||| |||| |||||||||||||| || |||||| |||||||||| | || |||| |||||||||||||||    
T  2262628 atttaaacataactttcgtagtctaagatgcagtttt-tcattcaataaaatcatggagaacttttctcaattttagtagattccgaaaacccttattt 2262725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 9295250 - 9295298
Alignment:
Q  213 tttttcattcaataaaattatcgagaacatttctcaattctggtggatt 261  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  9295250 ttttacattcaataaaattatcgagaacttttctcaattctggtggatt 9295298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 22512224 - 22512155
Alignment:
Q  209 cacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||| ||||||||||||||| |||||   | ||||||||||||||||||||| ||||||||||||    
T  22512224 cactttttttattcaataaaattattcgagattttctctcaattctggtggatttcggaaacccttattt 22512155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 12310755 - 12310838
Alignment:
Q  189 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 273  Q
    ||||||||||||||||||||||  |||| |||||||||||| |||||| ||| ||||| || | ||||||| | |||||||||||    
T  12310755 aactttcgtagcctaagaggcaactttt-cattcaataaaaatatcgataacttttcttaaatttggtggactccgaaaaccctt 12310838  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 18180873 - 18180792
Alignment:
Q  196 gtagcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||||||||||  ||||||||||||||| |||||   | ||||||||||||||||||  | ||||||||||||    
T  18180873 gtagcctaagaggcactttttg-attcaataaaattattcgagattttctctcaattctggtggattctggaaacccttattt 18180792  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 22922023 - 22921959
Alignment:
Q  214 ttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  22922023 ttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 22921959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 37490910 - 37490848
Alignment:
Q  189 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattct 253  Q
    |||||||||| ||||||| ||| |||||||||||||||||| |||||| || ||||| |||||||    
T  37490910 aactttcgtaacctaagatgca-ttttttcattcaataaaa-tatcgaaaaaatttcgcaattct 37490848  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 50005332 - 50005237
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttat 275  Q
    |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||    
T  50005332 atttaaacagaactttcgtagcctaagagacacctttt-cattcaataaaattatcgagaacttttctcaattttgatggattccgaaaacccttat 50005237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 45085645 - 45085726
Alignment:
Q  196 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctc--aattctggtggatttcgaaaacccttatt 276  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||| ||||||  |||||||||||||||||||||| ||||||    
T  45085645 gtagcctaagaggcagttttt-cattcaataaacttattgagaacttttctctcaattctggtggatttcgaaaactcttatt 45085726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 28260349 - 28260269
Alignment:
Q  189 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 270  Q
    |||||||||||||||| ||||| ||||  |||||||||||| |||||||||| ||| |||||||| ||||||| ||||||||    
T  28260349 aactttcgtagcctaaaaggcagttttg-cattcaataaaaatatcgagaacttttttcaattctagtggattccgaaaacc 28260269  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 13192984 - 13192935
Alignment:
Q  212 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 261  Q
    ||||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  13192984 ttttttcattcaataaatttatagagaagttttctcaattctggtggatt 13192935  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 40804558 - 40804640
Alignment:
Q  196 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||||  ||||||||||||||| ||  ||||||   || ||||||||||||||||||| | |||||| |||||    
T  40804558 gtagcctaagaggcaactttttcattcaataatatattcgagacttttctctcaattctggtggattttggaaacccgtattt 40804640  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 11923788 - 11923863
Alignment:
Q  193 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 270  Q
    ||||||||||||||| || ||||  ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||    
T  11923788 ttcgtagcctaagagacagttttc-cattcaataaaattatctag-acttttcttaattctagtggattacgaaaacc 11923863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 12486392 - 12486331
Alignment:
Q  220 ttcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttatttaat 280  Q
    |||||||||||||| |||||   | |||||||| ||||||||| ||||||||||||||||||    
T  12486392 ttcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttatttaat 12486331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 50335811 - 50335860
Alignment:
Q  213 tttttcattcaataaaattatcgagaacatttctcaa-ttctggtggatt 261  Q
    ||||||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  50335811 tttttcatttaataaaattattgagaacttttctcaatttctggtggatt 50335860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 50857634 - 50857553
Alignment:
Q  198 agcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||||||||  ||||| || |||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  50857634 agcctaagaggcacactttttgatacaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 50857553  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 27142682 - 27142601
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 261  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||| |||||||||    
T  27142682 atttaaacagaactttcgtagcctaagaggcagttttt-cattcaataaaattatcgaaaacttttctcaattatggtggatt 27142601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 2339237 - 2339157
Alignment:
Q  198 agcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||  ||||||||||||||||||||||||||   || ||||||||||||||||||||| ||||||||||||    
T  2339237 agcctaagaggcatctttttcattcaataaaattatcgagacttttctctcaattctggtggatttcggaaacccttattt 2339157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 8568781 - 8568707
Alignment:
Q  193 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaac 269  Q
    ||||||||||||||| || ||||  ||||||||||||||||| || || ||||| |||||| ||||||| |||||||    
T  8568781 ttcgtagcctaagagacagttttc-cattcaataaaattatctag-acttttcttaattctagtggattccgaaaac 8568707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 19474795 - 19474728
Alignment:
Q  214 ttttcattcaat-aaaattatcgagaacatttctc-aattctggtggatttcgaaaacccttatttaat 280  Q
    |||||||||||| |||||||||||  |  |||||| |||||| ||||||||||||||||||||||||||    
T  19474795 ttttcattcaataaaaattatcga-tatttttctcaaattctagtggatttcgaaaacccttatttaat 19474728  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 54239490 - 54239587
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||| || |||||| |||||||||||  || ||||| || |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  54239490 atttaaacaaaactttggtagcctaagatacagttttt-caatcaataaaattatcgagaacttttctcaattttggtggattccgaaaacccttattt 54239587  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 15634545 - 15634644
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcactttt-ttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||| || ||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||  |||||| |||||  |||||| | ||||| |||||||    
T  15634545 atttaaacataactttcgtagtctaagagacactttttttcattcaataaaataatcgagaaattttctctattctaatggattccaaaaactcttattt 15634644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 38223213 - 38223136
Alignment:
Q  200 cctaagaggcacttttttcattcaat-aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||| ||||||||||||||||| |||||||||||| || |||||||||||| |||||||  | ||||||||||||    
T  38223213 cctaagagacacttttttcattcaataaaaattatcgag-acttttctcaattctagtggattctgtaaacccttattt 38223136  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 18490424 - 18490465
Alignment:
Q  213 tttttcattcaataaaattatcgagaacatttctcaattctg 254  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  18490424 tttttcattcaataaaattatcgagaacttttctcaattctg 18490465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 13085280 - 13085201
Alignment:
Q  198 agcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||| ||||||||| ||||||||||||||| |||||   | |||||||| ||||||||| |||||||||||||||    
T  13085280 agcctaagagacactttttt-attcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttattt 13085201  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 34943642 - 34943575
Alignment:
Q  193 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 261  Q
    |||||||||||||||  | |||||| ||||||||||||||| |||||||||| |||||| |||||||||    
T  34943642 ttcgtagcctaagagaaaatttttt-attcaataaaattatagagaacatttatcaattttggtggatt 34943575  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 6659531 - 6659439
Alignment:
Q  186 cagaactttcgtagcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||  |||||||||||||||  ||||| ||||| ||||| ||| |||||   | |||||||||||||||||| || ||||||||||||    
T  6659531 cagaacttatgtagcctaagaggcaactttttgattcactaaaactattcgagattttctctcaattctggtggattccggaaacccttattt 6659439  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 5841205 - 5841278
Alignment:
Q  196 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccc 271  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  5841205 gtagcctaagag--actattttcattcaataaaattatcgagaacttttctcaattcttgtggattccgaaaaccc 5841278  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 8781414 - 8781493
Alignment:
Q  198 agcctaagaggcacttttttcattcaataaaatta-tcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||||||| ||||||||||||    
T  8781414 agcctaagaggcacttttttcattcaataaaattattcgagatttactctcaattctggtggatttcg-aaacccttattt 8781493  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 27952520 - 27952427
Alignment:
Q  186 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  27952520 cagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 27952427  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 27956356 - 27956263
Alignment:
Q  186 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  27956356 cagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 27956263  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 33655525 - 33655608
Alignment:
Q  197 tagcctaagaggcact-tttttcattcaataaaatta-tcgagaacatttctcaa-ttctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||||  |||||||||||||||||||| ||||||   | |||||| |||||||||||| || ||||||||||||    
T  33655525 tagcctaagaggcacactttttcattcaataaaattattcgagattttctctcaatttctggtggattccggaaacccttattt 33655608  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 44675363 - 44675330
Alignment:
Q  244 tctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||||||| |||||||||||||||    
T  44675363 tctcaattctggtggattccgaaaacccttattt 44675330  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 32052957 - 32053018
Alignment:
Q  212 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 273  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||    
T  32052957 ttttttcattcaataaaattatagaaaacttttctcaattctggtggatttcggaaaccctt 32053018  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 22572585 - 22572497
Alignment:
Q  187 agaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||| |||| |||||||||||||||  || | |||||||| ||||||||| |||||||||||| ||||||| || ||||||||||||    
T  22572585 agaactttggtagtctaagaggcactttt--caataaataaaataatcgagaacttttctcaattcttgtggattccggaaacccttattt 22572497  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 4303347 - 4303433
Alignment:
Q  196 gtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttatttaat 280  Q
    ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||| ||||||| ||||||||||||||||||    
T  4303347 gtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctagtggattccgaaaacccttatttaat 4303433  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 32936926 - 32936869
Alignment:
Q  219 attcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||||    
T  32936926 attcaataaaattatcgagaat-tttctcaattatggtggattccgaaaacccttattt 32936869  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 31577324 - 31577291
Alignment:
Q  244 tctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||||||||||||||| ||||||||||||    
T  31577324 tctcaattctggtggatttcggaaacccttattt 31577291  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 15385128 - 15385061
Alignment:
Q  212 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttatttaa 279  Q
    ||||||||||||||||||||||||||||| |||||||||| |  ||||||||| |||| |||||||||    
T  15385128 ttttttcattcaataaaattatcgagaacttttctcaattttaatggatttcggaaactcttatttaa 15385061  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 35160932 - 35160836
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||||||||||||||||| ||||| |||||||||||| | |  ||||||||||||    
T  35160932 atttaaacagaactttggtagtctaagaggccgtttt--cattcaataaaattatcgagaacttttcttaattctggtggaatcctgaaacccttattt 35160836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 36844503 - 36844439
Alignment:
Q  213 tttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||| |||||||||||||||||| || ||| |||| | |||||| |||||||||||||||    
T  36844503 tttttcatttaataaaattatcgagaactttcctctattccgctggattccgaaaacccttattt 36844439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 7775315 - 7775390
Alignment:
Q  193 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 270  Q
    ||||||||||||||| || ||||| ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||    
T  7775315 ttcgtagcctaagagaca-tttttccattcaataaaattatctag-acttttcttaattctagtggattccgaaaacc 7775390  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 19677338 - 19677239
Alignment:
Q  179 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||| ||||||||  | | ||||||||||||  |||  ||||||||||||  ||||||   || |||||||||||||||||| |||||||||||||||    
T  19677338 atttaaacagaacttatgcatcctaagaggcacactttgtattcaataaaatattcgagacttttctctcaattctggtggattccgaaaacccttattt 19677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 40778988 - 40778895
Alignment:
Q  186 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||  |||| |||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| |  ||||||||||||    
T  40778988 cagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccagaaacccttattt 40778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 8361 - 8264
Alignment:
Q  180 tttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaac-atttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |||||| |  ||||||||||||| |||||| |  ||||||||||||    
T  8361 tttaaacagaactttcgtagcctaagagacac-tttttcattcaatcaaattttcgagatctttttctcaattctgatggattccagaaacccttattt 8264  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 28762 - 28711
Alignment:
Q  226 aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||||||||| ||||||||||||||| |||| || ||||||||||||    
T  28762 aaaattatcgagaacttttctcaattctggtagattccggaaacccttattt 28711  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 1151119 - 1151179
Alignment:
Q  213 tttttcattcaataaaa-ttatcgagaacatttctcaattctggtggatttcgaaaaccctt 273  Q
    ||||||||||||||||| |||| |||| | |||||||||||||||||||| |||||||||||    
T  1151119 tttttcattcaataaaaattatagaga-cttttctcaattctggtggattccgaaaaccctt 1151179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 20398543 - 20398508
Alignment:
Q  242 tttctcaattctggtggatttcgaaaacccttattt 277  Q
    |||||||||||||||||||| |||||||||||||||    
T  20398543 tttctcaattctggtggattccgaaaacccttattt 20398508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 4580453 - 4580543
Alignment:
Q  186 cagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||| | ||| ||||| ||||||||  |||||||||||||  |||||||  || |||||||||| |||||||  ||||||||||||||    
T  4580453 cagaacttttgcagcgtaagatgcactttt--cattcaataaaatattcgagaattttctctcaattctagtggattctgaaaacccttattt 4580543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 5128824 - 5128889
Alignment:
Q  213 tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  5128824 tttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 5128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 43304102 - 43304069
Alignment:
Q  244 tctcaattctggtggatttcgaaaacccttattt 277  Q
    ||||||||||||||||||||| ||||||||||||    
T  43304102 tctcaattctggtggatttcggaaacccttattt 43304069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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