View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_high_26 (Length: 348)
Name: NF18575_high_26
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_26 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 8529357 - 8529672
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529357 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
8529456 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529457 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
8529556 |
T |
|
| Q |
216 |
ttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529557 |
ttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
8529656 |
T |
|
| Q |
316 |
cttatcaatatctctg |
331 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8529657 |
cttatcaatatctctg |
8529672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 8535921 - 8536235
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||||||| | |||| |
|
|
| T |
8535921 |
cacttcaacatttctccaggatggggttccaagtgtgtttatctcaagggtcaaacgctcaaactcccacacattggcacgtttaacatgtctcacccac |
8536020 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
215 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| ||| || ||| | | ||||||||||||||| |
|
|
| T |
8536021 |
atgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtcctagccttcttacccgattttgatccgcaatagattcaggaagtc |
8536120 |
T |
|
| Q |
216 |
ttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
315 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536121 |
ttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
8536220 |
T |
|
| Q |
316 |
cttatcaatatctct |
330 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
8536221 |
cttatcaaaatctct |
8536235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 1599986 - 1599679
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| || || ||||||| ||||||||| ||| | || | |
|
|
| T |
1599986 |
cacttcaacatttctccaggatggtgttccaagtgtgtttatctcaaggatcacaatcttaaactccaacgcattggcacgtttaacatatctcaccctc |
1599887 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
215 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||| |||||| |||| | |||||||||||||||| |
|
|
| T |
1599886 |
atgtttatcaccttatattcattagttttaggttggaaaccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattcaggaagtc |
1599787 |
T |
|
| Q |
216 |
ttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
315 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1599786 |
ttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaagaattcacaatattaaa |
1599687 |
T |
|
| Q |
316 |
cttatcaa |
323 |
Q |
| |
|
|||||||| |
|
|
| T |
1599686 |
cttatcaa |
1599679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 9074412 - 9074118
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||| |||||| ||||| |||||||||||||| |
|
|
| T |
9074412 |
cacttcaacatttctcaatattgttgttccaagtgtgtttatctgaaggatcacacggtca------------ttggcacgtttaccatgtcttatccac |
9074325 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
215 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||| || |||| ||||||||||| |
|
|
| T |
9074324 |
attcttattaccttatattcattagtattaggttggaatccaaaaccaacttgtcctaccattcttacccgagttcgattcgtggtagcttcaggaagtc |
9074225 |
T |
|
| Q |
216 |
ttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9074224 |
ttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
9074125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 8547588 - 8547470
Alignment:
| Q |
197 |
gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc |
296 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||| || ||| |||||||||||||| || ||| ||| |
|
|
| T |
8547588 |
gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc |
8547489 |
T |
|
| Q |
297 |
aagaattcacaatatcaaa |
315 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8547488 |
aagaattcacaatatcaaa |
8547470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 8637293 - 8637454
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||| | ||||||||||| || ||| ||||||||||| ||||| | ||||||||| || ||| |
|
|
| T |
8637293 |
cacttcagcatttctccatgatggtgttccaagtgtatatatctcaaggaccatacgatcaaacacccaacgattgcctcgtttaacatcactgccccat |
8637392 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcat |
177 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
8637393 |
attcttatcaccttatattcattagttttaggttggaaaccaaaaccaacttgtcctcgcat |
8637454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 8641800 - 8641866
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacc |
82 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8641800 |
cacttcaacatttctccatgatggtgctccaagtgtgtttatctcaaggatcacacgctcaaacacc |
8641866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 2856573 - 2856268
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || |||| |||||| || | ||||||||||||||| | ||||| | || |||||| | | ||||| |
|
|
| T |
2856573 |
cacttcaacatttctccatgatgatgttccgagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccac |
2856474 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttga--ccttgcattcttactcgagttcgattt-gtagtagattcaggaa |
212 |
Q |
| |
|
| | || |||||||||||||||||||| |||||||| |||||||||||||| || ||| | ||| | ||| || | |||||| |||||||| |
|
|
| T |
2856473 |
attatgatcaccttatattcattagttttgggttggaaaccaaaaccagcttgtacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaa |
2856374 |
T |
|
| Q |
213 |
gtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatc |
312 |
Q |
| |
|
|| || | || |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || |||||||||||||||||||| | |
|
|
| T |
2856373 |
gtattgtaaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaatgcc |
2856274 |
T |
|
| Q |
313 |
aaactt |
318 |
Q |
| |
|
|||||| |
|
|
| T |
2856273 |
aaactt |
2856268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 2904689 - 2904384
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| || |||| ||||||||| | | |||||| |||||| | | ||||| || |||||||| | ||||| |
|
|
| T |
2904689 |
cacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaagcactagacgctcgaacaccaaatcgttggcccgtctaacatgtttattccac |
2904590 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttga--ccttgcattcttactcgagttcgattt-gtagtagattcaggaa |
212 |
Q |
| |
|
| |||| |||||||||||||||||||| |||||||| |||||||||||||| || ||| | ||| | ||| || | |||||| |||||||| |
|
|
| T |
2904589 |
attattatcaccttatattcattagttttgggttggaaaccaaaaccagcttgcacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaa |
2904490 |
T |
|
| Q |
213 |
gtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatc |
312 |
Q |
| |
|
|| || |||| |||| ||| ||||||||||| ||| |||| ||| |||| ||||| ||||| |||||||| || |||||||||||||||||||| | |
|
|
| T |
2904489 |
gtattgtgaattccctcgttactgggttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaatgcc |
2904390 |
T |
|
| Q |
313 |
aaactt |
318 |
Q |
| |
|
|||||| |
|
|
| T |
2904389 |
aaactt |
2904384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 2874183 - 2873878
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || |||| |||||| || | ||||||||||||||| | ||||| | || |||||| | | |||| |
|
|
| T |
2874183 |
cacttcaacatttctccatgatggtgttccgagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccat |
2874084 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttga--ccttgcattcttactcgagttcgattt-gtagtagattcaggaa |
212 |
Q |
| |
|
| | || |||||||||||||||||||| |||||||| | |||||||||||| || ||| | ||| | ||| || | |||||| |||||||| |
|
|
| T |
2874083 |
attatgatcaccttatattcattagttttgggttggaaactaaaaccagcttgtacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaa |
2873984 |
T |
|
| Q |
213 |
gtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatc |
312 |
Q |
| |
|
|| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || |||||||||||||||||||| | |
|
|
| T |
2873983 |
gtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaatgcc |
2873884 |
T |
|
| Q |
313 |
aaactt |
318 |
Q |
| |
|
|||||| |
|
|
| T |
2873883 |
aaactt |
2873878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 318
Target Start/End: Complemental strand, 2844548 - 2844435
Alignment:
| Q |
205 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
304 |
Q |
| |
|
|||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
2844548 |
ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc |
2844449 |
T |
|
| Q |
305 |
acaatatcaaactt |
318 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2844448 |
acaatgccaaactt |
2844435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 9003883 - 9004028
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||||| ||||||||||||| ||||||||||||| | | |||| || | |||||||||| |||| |
|
|
| T |
9003883 |
cacttcaacatttctccatgatggtgttcccagtgtg--tatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccat |
9003980 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaacca |
163 |
Q |
| |
|
| |||| |||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
9003981 |
atttttatcaccttataatcattagttttaggttgataaccaaaacca |
9004028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 2844746 - 2844594
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||| |||| |||||| || | ||||||||||||||| | ||||| || |||||| | | ||||| |
|
|
| T |
2844746 |
cacttcaacctttctccatgatggtgttccaagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtttcgtctaacatatttgttccac |
2844647 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttg |
168 |
Q |
| |
|
| | || |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
2844646 |
attatgatcaccttatattcattagttttgggttggaaaccaaaaccagcttg |
2844594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 8644833 - 8644956
Alignment:
| Q |
199 |
agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaa |
298 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||||||| ||||| || |||||||| |||| | |||| | | ||||||||| || ||||||||| |
|
|
| T |
8644833 |
agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatggtcttccttcaaatggatgacgcaaacaaagcaagccattgcaa |
8644932 |
T |
|
| Q |
299 |
gaattcacaatatcaaacttatca |
322 |
Q |
| |
|
|||||||||| | ||||||||||| |
|
|
| T |
8644933 |
gaattcacaacaccaaacttatca |
8644956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 8644639 - 8644687
Alignment:
| Q |
17 |
acttcaacatttctccaggatgttgttccaagtgtgtttatctcaagga |
65 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
8644639 |
acttcagcatttctccatgatggtgttccaagtgtgtttatctcaagga |
8644687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 8644747 - 8644787
Alignment:
| Q |
125 |
accttatattcattagttttaggttggaatccaaaaccagc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8644747 |
accttatattcattagttttaggttggaagccaaaagcagc |
8644787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 8678240 - 8678304
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgtt-ccaagtgtgtttatctcaaggatcacacgctcaaac |
79 |
Q |
| |
|
||||||| |||||||||| |||| |||| |||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
8678240 |
cacttcagcatttctccatgatggtgtttccaattgtgtttatctcaaggatcatacgatcaaac |
8678304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 11354082 - 11354043
Alignment:
| Q |
119 |
cttattaccttatattcattagttttaggttggaatccaa |
158 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11354082 |
cttatcaccttatattcattagttttaggttggaagccaa |
11354043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 11373311 - 11373350
Alignment:
| Q |
119 |
cttattaccttatattcattagttttaggttggaatccaa |
158 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11373311 |
cttatcaccttatattcattagttttaggttggaagccaa |
11373350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 9004088 - 9004132
Alignment:
| Q |
208 |
aggaagtcttatgaactcccccgtgactgggttgcagatcactaa |
252 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||||| |
|
|
| T |
9004088 |
aggaagtcttatgaattccccagtgactgggttgcataccactaa |
9004132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 9443518 - 9443833
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9443518 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcttgtttaacatgtcttatccac |
9443617 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443618 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
9443717 |
T |
|
| Q |
216 |
ttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443718 |
ttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
9443817 |
T |
|
| Q |
316 |
cttatcaatatctctg |
331 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9443818 |
cttatcaatatctctg |
9443833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 48361538 - 48361223
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| | |||| |
|
|
| T |
48361538 |
cacttcaacattcctccaggatggtgttccaagtgtgtttatctcaaggatcacacgctcaaactcccacgcattggcacgtttaacatgtctcacccac |
48361439 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtc |
215 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
48361438 |
atgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttacccgagttcgatacgcagtagattcaggaagtc |
48361339 |
T |
|
| Q |
216 |
ttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361338 |
ttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaagaattcacaatatcaaa |
48361239 |
T |
|
| Q |
316 |
cttatcaatatctctg |
331 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
48361238 |
cttatcaaaatctctg |
48361223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 35780233 - 35780544
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||||||||||||| || ||||| ||||| ||||||||||| | ||||||| ||| ||||||||||||||| |
|
|
| T |
35780233 |
cacttcaacagttctccatgatggtgctccaagtgtgtttatttcgaggataacacgatcaaacacccaatcattggcacgttgaacatgtcttatccat |
35780332 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga---gt------tc------gatttgtag |
200 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || || || | |||| |
|
|
| T |
35780333 |
atttttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttactcgatccgtatttaatcttaaaggagtcgtag |
35780432 |
T |
|
| Q |
201 |
tagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatggg-tttccaaaagatgggtcagacaaacaaagtaaaccattgcaag |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||| | |||||||||||| ||||||||||||| |
|
|
| T |
35780433 |
tagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccattgcaag |
35780532 |
T |
|
| Q |
300 |
aattcacaatat |
311 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
35780533 |
aattgacaatat |
35780544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 16716982 - 16717108
Alignment:
| Q |
196 |
tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg |
295 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||| || ||| ||||||||||| || || ||||| |
|
|
| T |
16716982 |
tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta |
16717081 |
T |
|
| Q |
296 |
caagaattcacaatatcaaacttatca |
322 |
Q |
| |
|
|| ||||||||||||| |||||||||| |
|
|
| T |
16717082 |
catgaattcacaatattaaacttatca |
16717108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 5131187 - 5131316
Alignment:
| Q |
16 |
cacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccac |
115 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| |||| || |||| |||||||||| |||| ||| |
|
|
| T |
5131187 |
cacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccat |
5131286 |
T |
|
| Q |
116 |
acgcttattaccttatattcattagtttta |
145 |
Q |
| |
|
| |||| ||||||||||||||||||||| |
|
|
| T |
5131287 |
atttttatcaccttatattcattagtttta |
5131316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 26324187 - 26324109
Alignment:
| Q |
22 |
aacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgttta |
100 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||| ||||| ||| ||||| |
|
|
| T |
26324187 |
aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaaaacccattgattagcacgttta |
26324109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 5293 - 5398
Alignment:
| Q |
205 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| || ||| | ||||||||| || || ||||| || |||||| |
|
|
| T |
5293 |
ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccattacaggaattc |
5392 |
T |
|
| Q |
305 |
acaata |
310 |
Q |
| |
|
|||||| |
|
|
| T |
5393 |
acaata |
5398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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