View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_3 (Length: 797)
Name: NF18575_high_3
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 27 - 681
Target Start/End: Original strand, 25839382 - 25840037
Alignment:
| Q |
27 |
ttatatttatactctatacaaatacggagaactaaaaatcctttgtgagaa-gnnnnnnnnccatgttaatgagaatatgagttcggtttatggatggag |
125 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
25839382 |
ttatatttatactttatataaatacggagaactaaaaatcctttgtgagaaagaaaaaaaaccatgttaatgagaatatgagttcggtttatggatggag |
25839481 |
T |
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| Q |
126 |
caatttttaatcagattttacttatatctaggttgaattccgaattattagagatctttctttcgataacaccatggttaacaaaaatacatttggaaat |
225 |
Q |
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| T |
25839482 |
caatttttaatcagattttacttatatctaggttgaattccgaattattagagatctttctttcgataaccccatggttaacaaaaatacatttggaaat |
25839581 |
T |
|
| Q |
226 |
gatttgattgagaattaatgtaccaaattgatgaaaatggttcttatctttgatgtaattatagttaattttctttaaatttatacattttctttttgca |
325 |
Q |
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| T |
25839582 |
gatttgattgagaattaatgtaccaaattgatgaaaatggttcttatctttgatgtaattatagttaattttctttaaatttatacattttctttttgca |
25839681 |
T |
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| Q |
326 |
aacatgttattactatcaagtgtctattcgttttgtacttctgtattaatctcatcaaagaatttatttggaccatctttattgaagtcttccatttgaa |
425 |
Q |
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| T |
25839682 |
aacatgttattactatcaagtgtctattcgttttgtacttctgtattaatctcatcaaagaatttatttggaccatctttattgaagtcttccatttgaa |
25839781 |
T |
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| Q |
426 |
taatatttttctatcctcgagactatactataatattggtaaaaggttgaaacatatgtttgttgttgatttggattcaaattgagtttattgatcacta |
525 |
Q |
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| T |
25839782 |
taatatttttctatcctcgagactatactataatattggtaaaaggttgaaacatatgtttgttgttgatttggattcaaattgagtttattgatcacta |
25839881 |
T |
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| Q |
526 |
tgttacacataaataaaattcgtggtaaaaattttggtgcatgtttgaattgtgatagttttgatcaagaggaggcacttaagtcgtgttgtcatgtgtt |
625 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25839882 |
tgttacacataaataaaattcgtggtaaaaattttggtgcatgtttgaattctgatagttttgatcaagaggaggcacttaagtcgtgctgtcatgtgtt |
25839981 |
T |
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| Q |
626 |
tgtttaagaggtgttactattagacactgagttgcttcttcgtgtggttcatctta |
681 |
Q |
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| T |
25839982 |
tgtttaagaggtgttactattagacactgagttgcttcttcgtgtggttcacctta |
25840037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 747 - 781
Target Start/End: Original strand, 25840102 - 25840136
Alignment:
| Q |
747 |
gcgcaggccattttgagatattgttgggaagcttt |
781 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
25840102 |
gcgcaggctattttgagatattgttgggaagcttt |
25840136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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