View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_high_30 (Length: 316)
Name: NF18575_high_30
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_30 |
 | |
|
| [»] scaffold1319 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 13319740 - 13319586
Alignment:
| Q |
145 |
tagctcagaagactgggcaccacccaaactaccgttagttagtagttcattgtgccagatgaagcatccctagtaaggggaactcgcgaagatgaaatta |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
13319740 |
tagctcagaagactgggcaccacccaaactaccgttagttagtagttcattgtgccagatgaagcatccctagtaaggggaacttgcgaagatgaagtta |
13319641 |
T |
|
| Q |
245 |
accttatttagggtaaagtttggaagacttttgctccctttgaggttatcatttc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13319640 |
accttatttagggtaaagtttggaagacttgtgctccctttgaggttatcatttc |
13319586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 13319849 - 13319810
Alignment:
| Q |
37 |
acaaaaatataaaaggggaacaaatccctagcgagaagag |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13319849 |
acaaaaatataaaaggggaacaaatccctagcgagaagag |
13319810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1319 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1319
Description:
Target: scaffold1319; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 1042 - 1087
Alignment:
| Q |
28 |
caccaaacaacaaaaatataaaag-gggaacaaatccctagcgaga |
72 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
1042 |
caccaaacaacaaaaatataaaagaggaaacaaatccctagcgaga |
1087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University