View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_34 (Length: 307)
Name: NF18575_high_34
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 7023287 - 7023573
Alignment:
| Q |
3 |
cagataggtggcagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaagcattatgagatgttagttgaagatttgaagcaaattga |
102 |
Q |
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| T |
7023287 |
cagataggtggcagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaggcattatgagatgttagttgaagatttgaagcaaattga |
7023386 |
T |
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| Q |
103 |
ggaaggtcatgttcctttgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaagg----taatttttactacttaa |
198 |
Q |
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| T |
7023387 |
ggaaggtcatgttcctttgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaaggtaattaatttttactacttaa |
7023486 |
T |
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| Q |
199 |
tccttnnnnnnntattgtagatagacaaaatataatagtcattgaaaactcataaagagatagatgatgagtcagggtttgaaacca |
285 |
Q |
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| T |
7023487 |
tccttaaaaaaatattgtagatagataaaatataatagtcattgaaaactcataaagagatagatgatgagtcagggtttgaaacca |
7023573 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 52365424 - 52365486
Alignment:
| Q |
11 |
tggcagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaagcattatgag |
73 |
Q |
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| T |
52365424 |
tggcagaaggtggctagagctgtgggagggaagactgttgaagaagtgaaaaggcattatgag |
52365486 |
T |
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