View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_37 (Length: 287)
Name: NF18575_high_37
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 21187137 - 21186866
Alignment:
| Q |
1 |
atttcggcgacttattcatcgcatccttctctcgcaattcaatctgattaaactttcccggcaaacacacgcaatcatcgatcatgaatcctctctacag |
100 |
Q |
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| T |
21187137 |
atttcggcgacttattcatcgcatccttctctcgcaattcaatctgattaaactttcccggcaaacacacgcaatcatcgatcataaatcctctctacag |
21187038 |
T |
|
| Q |
101 |
gaatgcgtttaaggtaatcaattgaatccttcaaatcaaatcaacttcacactgttcttgtaatgcgtgtgtagatacttttaatgcatgtatagatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21187037 |
gaatgcgtttaaggtaatcaattgaatccttcaaatctaatcaacttcacactgttcttgtaatgcgtgtgtagatacttttaatgcatgtattgatttt |
21186938 |
T |
|
| Q |
201 |
gttatttttaagctgaaattggtgatgtgtgttgataatttttatttgattatggttttaatgttgttagtt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21186937 |
gttatttttaagctgaaattggtgatgtgtgttgataatttttatttgattatggttttaatgttgttagtt |
21186866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 8334815 - 8334977
Alignment:
| Q |
14 |
attcatcgcatccttctctcgcaattcaatctgattaaactttcccggcaaacacacgcaatcatcgatcatgaatcc--tctctacaggaatgcgttta |
111 |
Q |
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| T |
8334815 |
attcatcaaatccttctcttgcaattcgatctgattcaactttcccggcgaacacactcaatcatcgattgtgaatcctttctctacaggaatgttattg |
8334914 |
T |
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| Q |
112 |
aggtaatcaattgaatccttcaaatcaaatcaacttcacactgttcttgtaatgcgtgtgtag |
174 |
Q |
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| T |
8334915 |
aggtaataaattgaatcctttgaatcgaatcaacttcacactgttcgtgcaatccatgtgtag |
8334977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 8335090 - 8335148
Alignment:
| Q |
214 |
tgaaattggtgatgtgtgttgataatttttatttgattatggttttaatgttgttagtt |
272 |
Q |
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| T |
8335090 |
tgaaattggtgatgtttgatgataatttttatttgtttatggttttaatgcggttagtt |
8335148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 15085957 - 15086104
Alignment:
| Q |
24 |
tccttctctc-gcaattcaatctgattaaactttcccggcaaacacacgcaatcatcgatcatgaatcc--tctctacaggaatgcgtttaaggtaatca |
120 |
Q |
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| T |
15085957 |
tccttctctccgcaattcgatctgattcaacttccccggcgaatacacgcaatcatcgatcatgaatcctttctcttcaggaacgcgtttgaggtaatca |
15086056 |
T |
|
| Q |
121 |
attgaatccttcaaatcaaatcaacttcacactgttcttgtaatgcgt |
168 |
Q |
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||||||||||| |||| |||| ||| ||||||||||| ||||||| |
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| T |
15086057 |
attgaatcctttcaatcggatcagctttgcactgttcttgcaatgcgt |
15086104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 7183670 - 7183764
Alignment:
| Q |
14 |
attcatcgcatccttctctcgcaattcaatctgattaaactttcccggcaaacacacgcaatcatcgatcatgaatcc--tctctacaggaatgcg |
107 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||| ||||| |||||| ||||||||||| ||||| ||| ||||||||||| |||| |
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| T |
7183670 |
attcatcgaatccttctctcgcaattcgatctgattcaacttt-ccggcgaacacatgcaatcatcgaccatgattcctttctctacaggattgcg |
7183764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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