View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_high_42 (Length: 262)

Name: NF18575_high_42
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_high_42
NF18575_high_42
[»] chr4 (13 HSPs)
chr4 (19-244)||(3810073-3810298)
chr4 (9-228)||(3817657-3817876)
chr4 (35-209)||(4218735-4218909)
chr4 (28-235)||(3987061-3987268)
chr4 (31-228)||(3932834-3933031)
chr4 (28-224)||(4010073-4010269)
chr4 (75-228)||(3919654-3919807)
chr4 (35-209)||(3801678-3801852)
chr4 (38-230)||(4002370-4002562)
chr4 (95-244)||(4025283-4025432)
chr4 (113-227)||(3954360-3954474)
chr4 (119-168)||(3963218-3963267)
chr4 (119-179)||(4018830-4018890)
[»] scaffold1360 (1 HSPs)
scaffold1360 (31-168)||(1829-1966)
[»] chr5 (1 HSPs)
chr5 (38-230)||(13398021-13398213)
[»] chr8 (1 HSPs)
chr8 (118-168)||(7069135-7069185)
[»] chr2 (1 HSPs)
chr2 (114-156)||(42858991-42859033)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 3810298 - 3810073
Alignment:
Q  19 aagaatacaccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtca 118  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  3810298 aagaattcaccagttaaatcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgtta 3810199  T
Q  119 ttggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaa 218  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810198 tcggaatttggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaa 3810099  T
Q  219 ggtaagtgaagagttaacaagacatg 244  Q
    ||||||||||||||||||||||||||    
T  3810098 ggtaagtgaagagttaacaagacatg 3810073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 3817876 - 3817657
Alignment:
Q  9 gagtgagatgaagaatacaccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaag 108  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| | ||| |  ||||||| ||||||||||||||||||||| || ||    
T  3817876 gagtgagctgaagaattcaccggttaactcaaaagaacttgttggaattgacaaaccaattgcggatttgaattcattgttaaagaaagagtcagaacag 3817777  T
Q  109 gcccgtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtt 208  Q
    | |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  ||||| | |||| || ||||||||||||||||    
T  3817776 gtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtt 3817677  T
Q  209 tcttggaaaaggtaagtgaa 228  Q
    ||||||||||||| ||||||    
T  3817676 tcttggaaaaggtcagtgaa 3817657  T

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Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 4218909 - 4218735
Alignment:
Q  35 actcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtat 134  Q
    ||||||||| |||| ||||||| |||||| | ||| |||||||||| ||||||||||| ||||||||   ||||| |||||| |||||||||||||||||    
T  4218909 actcaaaaggacttattggaatggacaaaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat 4218810  T
Q  135 gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4218809 gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttt 4218735  T

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Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 3987268 - 3987061
Alignment:
Q  28 ccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaattt 127  Q
    |||||||||||||||| |||| |||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||    
T  3987268 ccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttaaattcattgttaaagaaagagtcacaaaaggtccgtgtgattggaattt 3987169  T
Q  128 ggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtga 227  Q
    ||||||||   || ||||||||||||||||||||| ||||| | ||| |||||| | | ||||||||||||||||||||||| |||| |||||| |||||    
T  3987168 ggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgttgttttttggcaaaggtgagtga 3987069  T
Q  228 agagttaa 235  Q
    | ||||||    
T  3987068 aaagttaa 3987061  T

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Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 3932834 - 3933031
Alignment:
Q  31 gttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggg 130  Q
    ||||| ||||||  ||||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||    
T  3932834 gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg 3932933  T
Q  131 gtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtgaa 228  Q
    | |||||||||||||||||||||||||||||| ||||| |||||  ||||| | |||| || ||||||||||||||||||||||||||||| ||||||    
T  3932934 gcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 3933031  T

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Target: chr4; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 4010269 - 4010073
Alignment:
Q  28 ccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaattt 127  Q
    |||||||||||||||| |||| |||||||||||||||| ||| |||||||||| ||||||||| | ||||||||| |||||| | |||||||||||||||    
T  4010269 ccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtcagtgtcattggaattt 4010170  T
Q  128 ggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaag 224  Q
    |||| |||||  |||||||||||||||||||||||  |||| | ||| |||||| ||| ||||||||||| ||||||||||| ||||||||||||||    
T  4010169 ggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaag 4010073  T

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Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 3919654 - 3919807
Alignment:
Q  75 tttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattattt 174  Q
    |||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  3919654 tttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatattt 3919753  T
Q  175 gaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtgaa 228  Q
      ||||| | |||| || ||||||||||||||||||||||||||||| ||||||    
T  3919754 agccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 3919807  T

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Target: chr4; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 3801852 - 3801678
Alignment:
Q  35 actcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtat 134  Q
    ||||| ||| |||| ||||||| |||| | | ||| |||||||||| ||||||||||| ||||||||   ||||| |||||| |||||||||||||||||    
T  3801852 actcagaaggacttattggaatggacagaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat 3801753  T
Q  135 gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttt 209  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||| | | | |||||||||||||||||||||    
T  3801752 gggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttt 3801678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 4002562 - 4002370
Alignment:
Q  38 caaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtatggg 137  Q
    |||||| |||| ||||||||| |||| |  || |||||||  |||||||||||    || ||| | |||||| |||||||||||||||||||||||||||    
T  4002562 caaaaggacttattggaattggcaaaccagttgcacatttagaatcattgttacgtcaacagttagaaaaggtccgtgtcattggaatttggggtatggg 4002463  T
Q  138 cggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtgaaga 230  Q
     |||||||||||||||||||||||  ||||| | ||| ||| || ||| ||||||||||| |||| |||||| ||||||||||||||||||||    
T  4002462 aggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgttttttggaaaaggtaagtgaaga 4002370  T

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Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 4025432 - 4025283
Alignment:
Q  95 aagagtcacaaaaggcccgtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaata 194  Q
    |||||||| ||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||    
T  4025432 aagagtcagaaaaggttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaata 4025333  T
Q  195 tgatggttgttgtttcttggaaaaggtaagtgaagagttaacaagacatg 244  Q
    ||| ||||||||||| |||| ||||||||||||||| |||  ||||||||    
T  4025332 tgaaggttgttgttttttggcaaaggtaagtgaagaattaggaagacatg 4025283  T

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Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 3954360 - 3954474
Alignment:
Q  113 gtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttctt 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| | | | ||| || ||| ||||||||||| ||||||||||| ||    
T  3954360 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctgaatatgaaggttgttgtttttt 3954459  T
Q  213 ggaaaaggtaagtga 227  Q
    || |||||| |||||    
T  3954460 ggcaaaggtgagtga 3954474  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 3963218 - 3963267
Alignment:
Q  119 ttggaatttggggtatgggcggtattggcaagacaactattgcaaaagaa 168  Q
    |||| |||||||||||||| |||||||||||||||||  ||||| |||||    
T  3963218 ttgggatttggggtatgggtggtattggcaagacaacccttgcagaagaa 3963267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 4018890 - 4018830
Alignment:
Q  119 ttggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgacca 179  Q
    |||| |||||||| ||||||||||||||||| |||||  ||||| ||||| ||||| ||||    
T  4018890 ttgggatttggggcatgggcggtattggcaaaacaacccttgcagaagaagtatttcacca 4018830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 1829 - 1966
Alignment:
Q  31 gttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggg 130  Q
    ||||| ||||||  ||||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||    
T  1829 gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg 1928  T
Q  131 gtatgggcggtattggcaagacaactattgcaaaagaa 168  Q
    | |||||||||||||||||||||||||||||| |||||    
T  1929 gcatgggcggtattggcaagacaactattgcagaagaa 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 13398213 - 13398021
Alignment:
Q  38 caaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtatggg 137  Q
    |||||| |||| |||||||||| ||| | ||| |||||||  || |||||||| |  |||||||| ||||||  || || ||||| ||||||||||||||    
T  13398213 caaaaggacttattggaattgagaaagcaattgcacatttagaaccattgttacatcaagagtcagaaaaggttcgcgtaattggtatttggggtatggg 13398114  T
Q  138 cggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtgaaga 230  Q
     |||||||| ||||||||||||||  ||||| | ||| | |||||||||||||||||||| || |||||||| |||| |||||| ||||||||    
T  13398113 aggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaaaggtgagtgaaga 13398021  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 7069185 - 7069135
Alignment:
Q  118 attggaatttggggtatgggcggtattggcaagacaactattgcaaaagaa 168  Q
    |||||||||||||||||| | |||||||| ||||||||||||||| |||||    
T  7069185 attggaatttggggtatgagtggtattggaaagacaactattgcagaagaa 7069135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 42859033 - 42858991
Alignment:
Q  114 tgtcattggaatttggggtatgggcggtattggcaagacaact 156  Q
    ||||||||| |||||||| |||||||||||||| |||||||||    
T  42859033 tgtcattggcatttggggcatgggcggtattgggaagacaact 42858991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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