View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_high_46 (Length: 250)
Name: NF18575_high_46
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_46 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 38931946 - 38931704
Alignment:
| Q |
8 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38931946 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatctttcttacattcaaaacattatctacgagac |
38931847 |
T |
|
| Q |
108 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931846 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
38931747 |
T |
|
| Q |
208 |
attaatgcatgggccattcaaagagatcctgaaacatggagtg |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931746 |
attaatgcatgggccattcaaagagatcctgaaacatggagtg |
38931704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 12151823 - 12151598
Alignment:
| Q |
8 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
107 |
Q |
| |
|
|||||||||||||| | |||| ||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12151823 |
aagcaaaggatgaattatacaccaaaataggcaatgatcgtttggtagatgagtcagacatttcaaatcttccatacattcaaaacattatctacgagac |
12151724 |
T |
|
| Q |
108 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
207 |
Q |
| |
|
||| | || |||||||| ||||||||| |||| |||||||||||||| | || || ||||| ||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
12151723 |
actaagattatactctcctgctccattactattacctcgtttttcttcggatgaatgtaatatcgaaggttatactattccacgtgacactatagttttg |
12151624 |
T |
|
| Q |
208 |
attaatgcatgggccattcaaagaga |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12151623 |
attaatgcatgggccattcaaagaga |
12151598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 38955786 - 38955843
Alignment:
| Q |
193 |
gacacgatagttttgattaatgcatgggccattcaaagagatcctgaaacatggagtg |
250 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
38955786 |
gacaccatagtattgatcaatgcttgggccattcatagagaccctgaaacatggagtg |
38955843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University