View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_high_50 (Length: 244)
Name: NF18575_high_50
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_50 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 1890717 - 1890927
Alignment:
| Q |
15 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1890717 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgct |
1890816 |
T |
|
| Q |
115 |
attggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtatataacaacttagtac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1890817 |
attggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtatacaacaacttagtac |
1890916 |
T |
|
| Q |
215 |
atgtttagatt |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
1890917 |
atgtttagatt |
1890927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 1884090 - 1884245
Alignment:
| Q |
32 |
ttgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattct |
131 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||| |
|
|
| T |
1884090 |
ttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttct |
1884189 |
T |
|
| Q |
132 |
ccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaa |
187 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1884190 |
ccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgttagaa |
1884245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 1895567 - 1895695
Alignment:
| Q |
15 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
1895567 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgct |
1895666 |
T |
|
| Q |
115 |
attggtactgctattctccttcctatcac |
143 |
Q |
| |
|
|||||||| || |||| |||||| |||| |
|
|
| T |
1895667 |
gttggtacttctgttcttcttcctgtcac |
1895695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 1911038 - 1911131
Alignment:
| Q |
30 |
tattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtact |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
1911038 |
tattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtact |
1911131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 1878084 - 1878189
Alignment:
| Q |
38 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcc |
137 |
Q |
| |
|
|||||||| ||| ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
1878084 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
1878183 |
T |
|
| Q |
138 |
tatcac |
143 |
Q |
| |
|
|||||| |
|
|
| T |
1878184 |
tatcac |
1878189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 1902000 - 1902083
Alignment:
| Q |
37 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
120 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
|
|
| T |
1902000 |
atggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 11537528 - 11537577
Alignment:
| Q |
37 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaa |
86 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
11537528 |
atgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa |
11537577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University