View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_56 (Length: 237)
Name: NF18575_high_56
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 53677339 - 53677120
Alignment:
| Q |
1 |
acaccccctcaccaggtactactgtttcactatttttatttcatttacagataattttaaatgaaattcatgtgtgaaatattaaaactcaactctgttt |
100 |
Q |
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| T |
53677339 |
acaccccctcaccaggtactactgtttcactatttttatttcatttacagataattttaaatgaaattcatgtgtgaaatattaaaactcaactctgttt |
53677240 |
T |
|
| Q |
101 |
gatgtatattgcagatgcattttctggtaacagtccatcgtggaaaccggaattagctattgttcaatattcacctaaaatggtaaattatagtgctgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53677239 |
gatgtatattgcagatgcattttctggtaacagtccatcttggaaaccggaattagctattgttcaatattcacctaaaatggtaaattatagtgctgaa |
53677140 |
T |
|
| Q |
201 |
tctcatgatgaaggtaattt |
220 |
Q |
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||||| |||||||||||||| |
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| T |
53677139 |
tctcacgatgaaggtaattt |
53677120 |
T |
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