View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_57 (Length: 229)
Name: NF18575_high_57
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_57 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 32390640 - 32390407
Alignment:
| Q |
1 |
tgatttgttttaagaaacaacaaccagattttacacaacatatgcaaaataattgacagcacgcnnnnnnntatatagttgtttacattac--------- |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32390640 |
tgatttgttttaagaaacaacaaccagattttacacaacatatgcaaaataattgacagcacgcaaaaaaatatatagttgtttacattactcaataatt |
32390541 |
T |
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| Q |
92 |
-------------atgacaaacacttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaataga |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32390540 |
aaccgtattcaatatgacaaacacttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaataga |
32390441 |
T |
|
| Q |
179 |
attctactcaattttattatgtttttgtttttga |
212 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
32390440 |
attctactcaattttattatgtttttatttttga |
32390407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 23256777 - 23256667
Alignment:
| Q |
102 |
cttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaatagaattctactcaattttattatgtt |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23256777 |
cttttccattcattgtagctcacaggttaccaacattaagatttaagactcaagggaaatttcaattcagcaatagaattctactcaattttattatgtt |
23256678 |
T |
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| Q |
202 |
tttgtttttga |
212 |
Q |
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| T |
23256677 |
tttgtttttga |
23256667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 21190624 - 21190502
Alignment:
| Q |
90 |
acatgacaaacacttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaatagaattctactcaa |
189 |
Q |
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|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
21190624 |
acatcacaatcacttttccattcattgtagctcataggttaccaacattaagatttaagactcaagggaaatttcaattcagcaatagaattctactcaa |
21190525 |
T |
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| Q |
190 |
ttttattatgtttttgtttttga |
212 |
Q |
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|||||| |||||||||||||||| |
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| T |
21190524 |
ttttatgatgtttttgtttttga |
21190502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 21190707 - 21190679
Alignment:
| Q |
30 |
tttacacaacatatgcaaaataattgaca |
58 |
Q |
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| T |
21190707 |
tttacacaacatatgcaaaataattgaca |
21190679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 45114396 - 45114518
Alignment:
| Q |
90 |
acatgacaaacacttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaatagaattctactcaa |
189 |
Q |
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|||| |||| ||||||||||||| ||| |||||| ||||||| |||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||| |
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| T |
45114396 |
acattacaaccacttttccattctttgcagctcacaggttactaacattaagatttaagactcaagggaaatttcaactcagcaatagcattctactcaa |
45114495 |
T |
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| Q |
190 |
ttttattatgtttttgtttttga |
212 |
Q |
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|||||| |||||||||||||||| |
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| T |
45114496 |
ttttatgatgtttttgtttttga |
45114518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 45114272 - 45114333
Alignment:
| Q |
30 |
tttacacaacatatgcaaaataattgacagcacgcnnnnnnntatatagttgtttacattac |
91 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
45114272 |
tttacacaacatatgcaaaataattgacagcatgcaaaaaaatatatggttgtttacattac |
45114333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 27292 - 27170
Alignment:
| Q |
90 |
acatgacaaacacttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaatagaattctactcaa |
189 |
Q |
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|||| |||| ||||||| ||||||| |||||||| | |||||||||||||||||||||| |||||| |||||||||| || |||||| ||||||||||| |
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| T |
27292 |
acatcacaatcactttttcattcatcgtagctcacacgttaccaacattaagatttaagactcaagagaaatttcaatccaacaatagcattctactcaa |
27193 |
T |
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| Q |
190 |
ttttattatgtttttgtttttga |
212 |
Q |
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|||||| |||||||||||||||| |
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| T |
27192 |
ttttatgatgtttttgtttttga |
27170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 31800198 - 31800114
Alignment:
| Q |
90 |
acatgacaaacacttttccattcattgtagctcagaggttaccaacattaagatttaagcctcaaggaaaatttcaattcagcaa |
174 |
Q |
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|||| |||| |||||||||||| ||||||| || |||||||||||||||||||| ||| |||||||||||||||| |||||||| |
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| T |
31800198 |
acatcacaaccacttttccatttattgtagttcccaggttaccaacattaagattcaagactcaaggaaaatttcatttcagcaa |
31800114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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