View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_high_9 (Length: 640)
Name: NF18575_high_9
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 328 - 623
Target Start/End: Original strand, 23324784 - 23325079
Alignment:
| Q |
328 |
taaaattaatgcgataattaattatcaattactgtccaaaattaataaggaaggtcaatgacgaaattccggaaaatacatgnnnnnnntaacaattggt |
427 |
Q |
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| T |
23324784 |
taaaattaatgcaataattaattatcaattactgtccaaaattaataaggaaggtcaatgacgaaattccggaaaatacatgaaaaaaataacaattggt |
23324883 |
T |
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| Q |
428 |
gatggaaattaatgcagataaaatattcggactcactccacaacatttcacaattgcaaaaggtgtaaccaaacacgaatcagatttatgtactatgata |
527 |
Q |
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| T |
23324884 |
gatggaaattaatgcagataaaatattcggactcactccacaacatttcacaattgcaaaaggtgtaactaaacacgaatcagatttatgtactatgata |
23324983 |
T |
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| Q |
528 |
tgagagactgcaggactgatctaggaccgtttgattgggatcgaatgattcaaaatatgatttatttattttgattgattccattgaacagagatg |
623 |
Q |
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| T |
23324984 |
tgagagactgcaggactgatctaggaccgtttgattgggatcggatgattcaaaatatgatttatttattttgattggttccattgaacagagatg |
23325079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 23324530 - 23324788
Alignment:
| Q |
12 |
atcaggaaatattcagatgagttgcgatgattgcggtttatgttttcatatatggcttgtaaaaatgtttaggcatggttcatattttattagtaataga |
111 |
Q |
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| T |
23324530 |
atcaggaaatatttggatgacttgcgatggctgcggtttatgttttcatatatggcttgtaaaaatgtttaggcatggttcatattttattagtagtaga |
23324629 |
T |
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| Q |
112 |
gttgagttacactcaacccaacaaagattaacgtctttgttatgtgttaattgaaatattttttgtaacaagataagatatagataatagataccaattg |
211 |
Q |
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| T |
23324630 |
gttgagatacactcaacccaacaaagattaacgtctttgttat-------ttgaaatattttttgtagcaagat------------atagataccaattg |
23324710 |
T |
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| Q |
212 |
ttttagaaaaagagagactatgggcatttttgtaaatgatagtaa---aactgcgggaaaaatgaatccatgataaaa |
286 |
Q |
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| T |
23324711 |
ttttagaaaaagagagactatgggcatttttgtaaatgatagtaaactaattgcgtgaaaaatgaatccatgataaaa |
23324788 |
T |
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