View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_1 (Length: 2125)

Name: NF18575_low_1
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_1
NF18575_low_1
[»] chr5 (50 HSPs)
chr5 (1687-2102)||(1161603-1162005)
chr5 (569-1005)||(1859904-1860326)
chr5 (1687-1917)||(879403-879633)
chr5 (19-160)||(1860318-1860458)
chr5 (1005-1177)||(1851098-1851269)
chr5 (427-568)||(38734607-38734748)
chr5 (1302-1428)||(882265-882389)
chr5 (583-736)||(8233975-8234127)
chr5 (377-517)||(2846353-2846496)
chr5 (574-736)||(14575930-14576091)
chr5 (579-737)||(36527393-36527549)
chr5 (377-506)||(2858187-2858317)
chr5 (582-735)||(30685546-30685698)
chr5 (579-739)||(14622453-14622611)
chr5 (582-737)||(1352752-1352906)
chr5 (581-743)||(25983031-25983192)
chr5 (398-541)||(4381683-4381824)
chr5 (377-568)||(41982444-41982637)
chr5 (206-378)||(9064557-9064731)
chr5 (582-702)||(30721368-30721487)
chr5 (579-734)||(19961520-19961674)
chr5 (622-737)||(40298260-40298374)
chr5 (581-743)||(13951094-13951255)
chr5 (579-729)||(18334397-18334546)
chr5 (588-736)||(25693631-25693782)
chr5 (577-722)||(3938371-3938515)
chr5 (607-700)||(33208414-33208506)
chr5 (576-703)||(15591693-15591824)
chr5 (1053-1203)||(882506-882657)
chr5 (612-737)||(4746049-4746173)
chr5 (1222-1273)||(882405-882456)
chr5 (605-679)||(730784-730858)
chr5 (605-715)||(14309927-14310036)
chr5 (426-504)||(4650316-4650398)
chr5 (622-743)||(28574814-28574934)
chr5 (440-521)||(31273961-31274042)
chr5 (80-160)||(4365980-4366060)
chr5 (647-743)||(7406216-7406311)
chr5 (499-561)||(41982571-41982633)
chr5 (620-720)||(4702556-4702656)
chr5 (620-743)||(41816516-41816638)
chr5 (454-505)||(41368095-41368146)
chr5 (646-739)||(42179786-42179877)
chr5 (609-680)||(3257476-3257547)
chr5 (606-700)||(1355771-1355864)
chr5 (508-566)||(2846439-2846497)
chr5 (219-253)||(22099132-22099166)
chr5 (579-617)||(30873085-30873123)
chr5 (582-679)||(16843866-16843963)
chr5 (220-249)||(27528331-27528360)
[»] chr7 (37 HSPs)
chr7 (186-378)||(44521475-44521669)
chr7 (206-378)||(7282552-7282727)
chr7 (582-740)||(20009652-20009807)
chr7 (581-730)||(48046893-48047039)
chr7 (573-743)||(23358416-23358586)
chr7 (582-739)||(40019761-40019917)
chr7 (588-743)||(48633918-48634072)
chr7 (582-735)||(25971417-25971568)
chr7 (393-550)||(9417136-9417294)
chr7 (619-740)||(37828356-37828477)
chr7 (635-743)||(17354394-17354501)
chr7 (576-668)||(42306575-42306667)
chr7 (485-571)||(8170195-8170281)
chr7 (658-743)||(36827807-36827891)
chr7 (377-488)||(38735908-38736020)
chr7 (620-738)||(31289467-31289584)
chr7 (670-743)||(42306269-42306341)
chr7 (638-734)||(676267-676361)
chr7 (622-737)||(43251878-43251991)
chr7 (620-718)||(45671750-45671846)
chr7 (982-1044)||(16698432-16698494)
chr7 (982-1044)||(17672668-17672730)
chr7 (630-712)||(25594585-25594666)
chr7 (436-530)||(28723755-28723848)
chr7 (442-496)||(31446663-31446717)
chr7 (494-568)||(38735949-38736023)
chr7 (192-253)||(10427830-10427891)
chr7 (495-568)||(29407675-29407748)
chr7 (442-530)||(37666563-37666650)
chr7 (462-561)||(13582681-13582780)
chr7 (411-494)||(30572539-30572621)
chr7 (578-617)||(33645314-33645353)
chr7 (621-684)||(43951934-43951997)
chr7 (494-568)||(9417239-9417313)
chr7 (216-253)||(25011694-25011731)
chr7 (707-736)||(32903088-32903117)
chr7 (436-505)||(45403565-45403634)
[»] chr4 (40 HSPs)
chr4 (186-378)||(22197529-22197722)
chr4 (206-378)||(37113080-37113255)
chr4 (583-743)||(55322940-55323099)
chr4 (579-743)||(53133447-53133610)
chr4 (202-367)||(8683969-8684137)
chr4 (579-743)||(49250038-49250201)
chr4 (582-741)||(50328373-50328531)
chr4 (619-737)||(41236021-41236138)
chr4 (579-739)||(26740738-26740897)
chr4 (625-743)||(47388488-47388605)
chr4 (582-683)||(9319862-9319963)
chr4 (579-743)||(46393122-46393285)
chr4 (578-684)||(31216961-31217067)
chr4 (607-737)||(42674026-42674155)
chr4 (202-378)||(6453409-6453583)
chr4 (574-685)||(38354247-38354358)
chr4 (620-735)||(45891311-45891425)
chr4 (454-551)||(53142123-53142220)
chr4 (627-734)||(4442248-4442354)
chr4 (427-505)||(27764038-27764116)
chr4 (634-734)||(8171077-8171177)
chr4 (580-741)||(34118901-34119061)
chr4 (605-741)||(31204310-31204445)
chr4 (206-378)||(34015082-34015256)
chr4 (620-743)||(12799944-12800066)
chr4 (581-743)||(17340300-17340459)
chr4 (624-735)||(48622251-48622361)
chr4 (605-720)||(37056181-37056296)
chr4 (580-663)||(966672-966755)
chr4 (619-702)||(16067812-16067894)
chr4 (444-518)||(38516098-38516172)
chr4 (578-634)||(2554192-2554248)
chr4 (434-494)||(34121087-34121147)
chr4 (600-713)||(24453154-24453266)
chr4 (619-739)||(31861072-31861190)
chr4 (672-736)||(5807359-5807422)
chr4 (212-259)||(8950304-8950351)
chr4 (219-253)||(10359056-10359090)
chr4 (630-720)||(33176500-33176589)
chr4 (455-504)||(29061608-29061657)
[»] chr2 (43 HSPs)
chr2 (186-366)||(16238690-16238872)
chr2 (579-743)||(44966021-44966184)
chr2 (186-320)||(22670008-22670141)
chr2 (206-378)||(25599216-25599391)
chr2 (427-541)||(6407924-6408038)
chr2 (583-740)||(40711173-40711328)
chr2 (579-743)||(34929193-34929356)
chr2 (186-286)||(45066013-45066112)
chr2 (433-516)||(39324792-39324875)
chr2 (206-378)||(36964486-36964659)
chr2 (582-737)||(31663402-31663555)
chr2 (581-722)||(1278109-1278247)
chr2 (633-739)||(44022164-44022269)
chr2 (622-743)||(25220763-25220883)
chr2 (582-703)||(27269137-27269257)
chr2 (209-268)||(959851-959909)
chr2 (588-743)||(6461240-6461393)
chr2 (464-572)||(4141295-4141404)
chr2 (85-160)||(22843504-22843578)
chr2 (622-737)||(33025195-33025309)
chr2 (612-720)||(8996551-8996659)
chr2 (581-661)||(34242357-34242437)
chr2 (687-739)||(41542760-41542812)
chr2 (965-1044)||(4091455-4091534)
chr2 (219-269)||(26311135-26311185)
chr2 (630-736)||(31742702-31742807)
chr2 (579-664)||(12972818-12972903)
chr2 (778-835)||(22843571-22843628)
chr2 (436-568)||(31127316-31127449)
chr2 (445-505)||(10042685-10042745)
chr2 (445-505)||(30856621-30856681)
chr2 (672-739)||(17696043-17696108)
chr2 (687-741)||(2080528-2080582)
chr2 (437-483)||(30019691-30019737)
chr2 (437-483)||(30040958-30041004)
chr2 (437-483)||(30046028-30046074)
chr2 (437-483)||(30078218-30078264)
chr2 (437-483)||(30110436-30110482)
chr2 (437-483)||(30137072-30137118)
chr2 (437-483)||(30235096-30235142)
chr2 (219-253)||(35499571-35499605)
chr2 (499-568)||(6407870-6407939)
chr2 (508-561)||(42352165-42352218)
[»] scaffold0385 (1 HSPs)
scaffold0385 (214-378)||(2800-2967)
[»] scaffold0019 (1 HSPs)
scaffold0019 (186-378)||(38479-38673)
[»] chr1 (34 HSPs)
chr1 (579-743)||(10881827-10881990)
chr1 (427-568)||(8245357-8245498)
chr1 (578-731)||(39275817-39275969)
chr1 (612-743)||(51295716-51295845)
chr1 (454-568)||(23391935-23392049)
chr1 (377-541)||(42106967-42107134)
chr1 (581-743)||(18023781-18023942)
chr1 (578-743)||(24466531-24466697)
chr1 (620-743)||(29587121-29587243)
chr1 (637-743)||(43949118-43949223)
chr1 (582-743)||(34710911-34711071)
chr1 (424-523)||(2138339-2138438)
chr1 (577-735)||(15279008-15279166)
chr1 (640-780)||(44595668-44595799)
chr1 (620-740)||(51050051-51050170)
chr1 (581-743)||(42549186-42549347)
chr1 (644-743)||(18436311-18436409)
chr1 (436-522)||(1035411-1035498)
chr1 (662-736)||(36313612-36313685)
chr1 (500-561)||(23391871-23391932)
chr1 (624-741)||(31262401-31262517)
chr1 (499-568)||(42106964-42107033)
chr1 (445-500)||(38645193-38645248)
chr1 (499-568)||(8245483-8245552)
chr1 (622-743)||(15401690-15401810)
chr1 (1488-1571)||(23809891-23809975)
chr1 (687-734)||(46220644-46220691)
chr1 (219-253)||(27895499-27895533)
chr1 (519-561)||(48915749-48915791)
chr1 (495-552)||(1035365-1035422)
chr1 (186-243)||(16236992-16237048)
chr1 (436-505)||(28867155-28867223)
chr1 (706-743)||(39412457-39412494)
chr1 (583-644)||(42728526-42728587)
[»] chr3 (34 HSPs)
chr3 (579-739)||(53287383-53287542)
chr3 (580-743)||(24657223-24657385)
chr3 (576-743)||(41519492-41519660)
chr3 (206-326)||(38472779-38472900)
chr3 (376-568)||(54449762-54449959)
chr3 (577-741)||(28554130-28554293)
chr3 (206-378)||(13014080-13014254)
chr3 (574-738)||(30732751-30732914)
chr3 (582-738)||(42791065-42791218)
chr3 (427-568)||(25750856-25750998)
chr3 (571-736)||(20378982-20379146)
chr3 (614-736)||(28392143-28392265)
chr3 (628-743)||(12789868-12789982)
chr3 (621-741)||(32733633-32733752)
chr3 (575-681)||(39990755-39990861)
chr3 (377-568)||(19594488-19594679)
chr3 (186-258)||(55339403-55339475)
chr3 (582-737)||(49447561-49447715)
chr3 (612-734)||(37700239-37700359)
chr3 (393-476)||(50293606-50293690)
chr3 (638-733)||(38627754-38627848)
chr3 (612-684)||(49230053-49230123)
chr3 (588-646)||(19664073-19664131)
chr3 (499-561)||(54449892-54449954)
chr3 (630-743)||(20796419-20796530)
chr3 (581-650)||(38703651-38703720)
chr3 (424-505)||(46690623-46690704)
chr3 (317-374)||(55339533-55339593)
chr3 (445-505)||(44685373-44685433)
chr3 (454-505)||(19582348-19582399)
chr3 (219-253)||(30187273-30187307)
chr3 (78-160)||(33690898-33690979)
chr3 (638-743)||(42760416-42760523)
chr3 (577-642)||(9762774-9762839)
[»] scaffold1786 (2 HSPs)
scaffold1786 (377-568)||(1133-1317)
scaffold1786 (501-561)||(1253-1313)
[»] chr8 (25 HSPs)
chr8 (588-743)||(40740672-40740826)
chr8 (578-743)||(4993230-4993392)
chr8 (606-743)||(39108536-39108672)
chr8 (593-736)||(32062259-32062401)
chr8 (206-288)||(27420359-27420441)
chr8 (425-518)||(39141873-39141966)
chr8 (408-566)||(3771558-3771713)
chr8 (603-703)||(4989258-4989357)
chr8 (596-719)||(36434658-36434781)
chr8 (625-737)||(44976118-44976228)
chr8 (582-701)||(5957038-5957156)
chr8 (579-739)||(10361128-10361288)
chr8 (605-720)||(11008025-11008139)
chr8 (650-743)||(3727139-3727231)
chr8 (600-713)||(35878953-35879065)
chr8 (456-500)||(30610865-30610909)
chr8 (436-574)||(9300893-9301032)
chr8 (663-737)||(9210000-9210073)
chr8 (648-738)||(43027844-43027933)
chr8 (377-505)||(6924178-6924306)
chr8 (646-737)||(70714-70804)
chr8 (580-664)||(32268789-32268872)
chr8 (501-536)||(6924242-6924277)
chr8 (607-737)||(19174067-19174197)
chr8 (219-253)||(42747271-42747305)
[»] scaffold0006 (1 HSPs)
scaffold0006 (628-739)||(50604-50714)
[»] chr6 (30 HSPs)
chr6 (582-739)||(2616973-2617129)
chr6 (582-739)||(9429568-9429723)
chr6 (434-561)||(278131-278259)
chr6 (582-704)||(30323078-30323199)
chr6 (580-733)||(17515337-17515489)
chr6 (464-568)||(1303355-1303458)
chr6 (579-743)||(2359630-2359793)
chr6 (186-378)||(12336046-12336239)
chr6 (443-523)||(33940927-33941006)
chr6 (582-736)||(24547989-24548140)
chr6 (636-739)||(4844441-4844543)
chr6 (408-524)||(2308324-2308440)
chr6 (630-743)||(13243778-13243890)
chr6 (400-570)||(27991838-27992010)
chr6 (582-743)||(33755428-33755594)
chr6 (582-743)||(9318697-9318856)
chr6 (644-739)||(11842267-11842361)
chr6 (577-743)||(3159591-3159756)
chr6 (427-566)||(4980433-4980568)
chr6 (630-739)||(3337656-3337764)
chr6 (579-737)||(2557279-2557435)
chr6 (495-542)||(2308402-2308449)
chr6 (623-665)||(29680042-29680084)
chr6 (508-568)||(23126766-23126826)
chr6 (454-505)||(2091392-2091443)
chr6 (214-253)||(3415672-3415711)
chr6 (377-491)||(23126769-23126883)
chr6 (605-720)||(28011631-28011744)
chr6 (598-664)||(2615105-2615171)
chr6 (687-741)||(7509656-7509710)
[»] scaffold0050 (2 HSPs)
scaffold0050 (619-743)||(37208-37329)
scaffold0050 (637-681)||(37800-37844)
[»] scaffold0119 (1 HSPs)
scaffold0119 (581-722)||(22844-22982)
[»] scaffold0027 (1 HSPs)
scaffold0027 (631-740)||(16852-16960)
[»] scaffold0047 (1 HSPs)
scaffold0047 (580-720)||(66115-66254)
[»] scaffold0329 (1 HSPs)
scaffold0329 (598-744)||(8184-8329)
[»] scaffold1609 (1 HSPs)
scaffold1609 (501-561)||(1-61)
[»] scaffold0211 (1 HSPs)
scaffold0211 (463-504)||(23393-23434)
[»] scaffold0635 (1 HSPs)
scaffold0635 (445-505)||(4325-4385)
[»] scaffold0004 (1 HSPs)
scaffold0004 (605-737)||(122445-122576)
[»] scaffold1951 (1 HSPs)
scaffold1951 (219-253)||(484-518)
[»] scaffold0343 (1 HSPs)
scaffold0343 (320-378)||(14045-14106)
[»] scaffold0007 (1 HSPs)
scaffold0007 (606-684)||(247640-247718)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 50)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1687 - 2102
Target Start/End: Original strand, 1161603 - 1162005
Alignment:
Q  1687 tcaagattaagtctttgtaattaactgttcctaagctaagttagccgagggaatattttgctgctatgtgtatgtgttgaagcccatgctgcttatgata 1786  Q
    ||||||| | |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||       ||    
T  1161603 tcaagatcaggtctttgtaattaactgttcttaagcttagttagccgagggaatgttttgctgctatgtgtatgtgttgaagaccatgctg-------ta 1161695  T
Q  1787 gctgacttggttatgtgcattgcatagcacatggatggttcctttctgactcactctacgtctgtggctacacacgtaatttctttgttgtcgacatgaa 1886  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  1161696 gctgacttggttatgtgcattgcatagcacatggatggttcctttctcactcactctatgtctgcggctacacacataatttctttgttgtcgacatgaa 1161795  T
Q  1887 atagggaacgacaccaatggagcttatgctttccttcttccccatattgcactttcttcgattgcttaagacaaaggagttgttgcagctgtgtctactg 1986  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  1161796 attggaaacgacaccaatggagcttatgctttccttcttccccatattgcactttcttcaattgcttaagacaaaggagttgttgcagctgtgtctgctg 1161895  T
Q  1987 gaaaattcttgtatgatttgagagtactaatacgttaaatagttaagattttgtcttaaccacctaatacgtttaatagtaatatttttaggcctaacta 2086  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      ||| ||||||||    
T  1161896 gaaaattcttgtatgatttgagagtactaatacgttaaatagttaaaattttgtcttaaccacctaatacgtttaatagtaa------tagtcctaacta 1161989  T
Q  2087 ccaaacatttcatcaa 2102  Q
    ||||||||||||||||    
T  1161990 ccaaacatttcatcaa 1162005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 569 - 1005
Target Start/End: Complemental strand, 1860326 - 1859904
Alignment:
Q  569 gttaattattgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaat-atagaaataatttattgaaatgtgtgcattatatttaatctt 667  Q
    |||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||     
T  1860326 gttaattattg--aaatgctaaattgtgcccttaaagcacaagttaatgcatcaaattataaaaataatttattgaaatgtgtgcattacatttaatctc 1860229  T
Q  668 tgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaacaatatgccctaagagcacaagtt 767  Q
    | | |||||||| |||||||||||||||||||||||  ||||||| |||||||| ||| ||||||||             ||||| ||||||||||||||    
T  1860228 tcattttttaatcaattttaatgcacaaaattttagagaatattttttcttttgattt-cttaacat-------------atgccttaagagcacaagtt 1860143  T
Q  768 aacactacccttaattatttgctcgcgagcatttcgtaataacatacgtcgttggatatagcagtacttagagtagaaattgatcatagcgttaaattgt 867  Q
    ||||||| ||||||||||||| ||| ||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||| ||| |||||    
T  1860142 aacactatccttaattatttgttcgagagcatttcgtgataacatacgtagttggatataacaatacttagagtagaaattgatcatagccttagattgt 1860043  T
Q  868 attaatatcctctctacatgagaattaatgttaatgttgtttggaaattg---ctcttctttttggttttactcattcacaagtttacacgagttatctt 964  Q
    |||||||||  |||||||||| ||||||||| ||||||||||||||||||    ||||||||||||||||||||||||| |||||||||||||||| |||    
T  1860042 attaatatc--ctctacatgataattaatgtcaatgttgtttggaaattgatcttcttctttttggttttactcattcataagtttacacgagttacctt 1859945  T
Q  965 acgttgaaaaaatcgaacgtgagttaacttatagtgaacat 1005  Q
    |||||||||||  |||||||||||||||||| |||||||||    
T  1859944 acgttgaaaaagccgaacgtgagttaacttacagtgaacat 1859904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-60
Query Start/End: Original strand, 1687 - 1917
Target Start/End: Complemental strand, 879633 - 879403
Alignment:
Q  1687 tcaagattaagtctttgtaattaactgttcctaagctaagttagccgagggaatattttgctgctatgtgtatgtgttgaagcccatgctgcttatgata 1786  Q
    ||||||| | ||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  879633 tcaagatcaggtctttgtaattaactgttccaaagctttattagcagagggaatattttgctgctatgtgtatgtgttgaagatcatgctgcttatggta 879534  T
Q  1787 gctgacttggttatgtgcattgcatagcacatggatggttcctttctgactcactctacgt-ctgtggctacacacgtaatttctttgttgtcgacatga 1885  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||| ||| | |||||||||||||||||| |||||||| ||||    
T  879533 gctgaattggttatgtgcattgcatagcacat-gatgcttcctttctcactcattctacgtcctgcgactacacacgtaatttcttggttgtcgatatga 879435  T
Q  1886 aatagggaacgacaccaatggagcttatgctt 1917  Q
    |||   ||||| ||||||||| | ||||||||    
T  879434 aattacgaacggcaccaatggtgtttatgctt 879403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 1e-54
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 1860458 - 1860318
Alignment:
Q  19 taaacacactaaattgattgctaaacgtctgcattaaaagtacttaggtaatcaaggcatgtatatttattgttgaccgccatcttttttccaccaacct 118  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1860458 taaacacactaaattgactgctaaacgtgtgcattaaacgtacttaggtaatcaaggcatgtatatttattgttgaccgccatcttttttccaccaacc- 1860360  T
Q  119 tcatgatttccgcaaagccacgttttgatattggttaattat 160  Q
    || |||||||||||||||||| ||||| ||||||||||||||    
T  1860359 tcctgatttccgcaaagccacattttggtattggttaattat 1860318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 8e-50
Query Start/End: Original strand, 1005 - 1177
Target Start/End: Complemental strand, 1851269 - 1851098
Alignment:
Q  1005 tttttaaaggaataaacaattttaaaagtgagaagagcaacaattttcatgttgcttttatgaagagatgtaaaaacatttgtaagcttcttgg-ttcta 1103  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  || | || ||||     
T  1851269 tttttaaaggaataaacaattttgaaagcgagaagagcagcaattttcatgttgcttttatgaagagatgtaaaaacatttgt-actttgtaggcttctt 1851171  T
Q  1104 acttctaagtcttggatgggatctgtccccaggatttttgttgctacatttgtaaggattcacatcttttttat 1177  Q
      |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||    
T  1851170 ggttctaagtcttggatgggatctgtccccagga-ttttgttgctacatttgtaaggattcatattttttttat 1851098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-38
Query Start/End: Original strand, 427 - 568
Target Start/End: Complemental strand, 38734748 - 38734607
Alignment:
Q  427 atcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgccc 526  Q
    ||||||| ||||| |||||||||||  |||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |     
T  38734748 atcaaatagaaaagtttaaaacaaaaataattagatcacatcaatcaacatcatttagttttattctcttttaatttttgcatttgatgtgagtgtgtct 38734649  T
Q  527 aaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||||| ||||||  ||||||  |||||||| ||||||    
T  38734648 aaatatttatcatttatagttgtgtttatagaagagtttctc 38734607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 7e-32
Query Start/End: Original strand, 1302 - 1428
Target Start/End: Complemental strand, 882389 - 882265
Alignment:
Q  1302 ggtaatgtcattccaattctcgtcattacacataccaaaagaggaagaaatttgcatacaatttcaaattttaaaaatggttttagaatatcaataatgg 1401  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||  |||||||||||||||||||     
T  882389 ggtaatgtcattccaattctagtctttacacataccaaaagaggaagaaatttgaataaaattttaaattttaagaatcattttagaatatcaataatg- 882291  T
Q  1402 agggagtactatattaacatgttccat 1428  Q
      | || ||||||||||||||||||||    
T  882290 -tgaaggactatattaacatgttccat 882265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-30
Query Start/End: Original strand, 583 - 736
Target Start/End: Original strand, 8233975 - 8234127
Alignment:
Q  583 aatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaa 682  Q
    |||| ||||||||||||||||  |||||||||||   ||||||| ||||||||||||||| | ||||||||||| ||||||||||| ||||||  ||| |    
T  8233975 aatgttaacttgtgcccttaagacacaaattaataattcaaataaagaaataatttattggattgtgtgcattaaatttaatctttaacttttcgatg-a 8234073  T
Q  683 ttttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    ||| |||||||||||||| ||  ||||||||||||||||  |||||||||||||    
T  8234074 tttaaatgcacaaaatttaagagaatatttcttcttttgagtttcttaacatgt 8234127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-30
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 2846496 - 2846353
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    |||||||| |||| | ||||||||||||||||| ||||||| ||||| || ||||||| ||||| |||||||||||  |||||  ||||| |||||||||    
T  2846496 aaactcttctatgaacacaagcacaaatgataaatatttggacgcactcacatcaaatggaaaattttaaaacaaaaataattagatcacctcaatcaac 2846397  T
Q  476 atcatttagttttattctcttttaatttttg--tatttgatgtg 517  Q
    ||||||||||||||||||||||||| |||||  |||||||||||    
T  2846396 atcatttagttttattctcttttaacttttgcatatttgatgtg 2846353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 6e-29
Query Start/End: Original strand, 574 - 736
Target Start/End: Complemental strand, 14576091 - 14575930
Alignment:
Q  574 ttattgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactt 673  Q
    |||| |||||||| ||| ||||||||||||  || || |||||   | ||||||||||||| ||||| ||||||||||||||| ||| ||| ||| ||||    
T  14576091 ttatggggaaatgttaatttgtgcccttaagacataagttaataagtaaaatatagaaatagtttatcgaaatgtgtgcattacattgaatatttaactt 14575992  T
Q  674 tttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    ||||||||| || ||||||||||||||||| |||||||| ||||||||  |||||||||||||    
T  14575991 tttaatgaa-ttgaatgcacaaaattttagtaaatattttttcttttgagtttcttaacatgt 14575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-29
Query Start/End: Original strand, 579 - 737
Target Start/End: Original strand, 36527393 - 36527549
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| ||| ||||||||| |  |||||| |||||| |||||||||||||||| ||||||| | ||||||||||  ||||||||||| || ||||||    
T  36527393 gggaaatgttaagttgtgccctgagggcacaagttaatgtatcaaatatagaaatagtttattggagtgtgtgcattgcatttaatctttaac-ttttaa 36527491  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    | || || |||||||||||||||||  ||||||| ||||||||| ||||||||||||||    
T  36527492 t-aaattgaatgcacaaaattttagagaatatttattcttttggatttcttaacatgtg 36527549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-26
Query Start/End: Original strand, 377 - 506
Target Start/End: Complemental strand, 2858317 - 2858187
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    |||||||| |||| | |||||||||||||| || ||||||| ||| | || ||||||| |||||||||||||||||  ||| |  |||||||||||||||    
T  2858317 aaactcttctatgaacacaagcacaaatgaaaaatatttggacgcgctcacatcaaatggaaaaatttaaaacaaaaataaatagatcacatcaatcaac 2858218  T
Q  476 atcatttagttttattctcttttaatttttg 506  Q
    ||||||||||||||||||||||||| |||||    
T  2858217 atcatttagttttattctcttttaacttttg 2858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 6e-26
Query Start/End: Original strand, 582 - 735
Target Start/End: Original strand, 30685546 - 30685698
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| |||||||||| |||||  || ||| ||||| | |||||||||||||| ||||||||||| ||||||||| ||||||| |||   ||||||||||    
T  30685546 aaatgttaacttgtgctcttaagacataaactaatgaaacaaatatagaaatagtttattgaaatatgtgcattacatttaatttttagttttttaatga 30685645  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatg 735  Q
    | || ||||||||||||||||  ||||||||||||||||   ||||||||||||    
T  30685646 a-ttgaatgcacaaaattttataaaatatttcttcttttaaatttcttaacatg 30685698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 579 - 739
Target Start/End: Complemental strand, 14622611 - 14622453
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||||||| |||||| |||||| ||||| ||||||  ||||||||||||||||||||||| || |||||||||  ||| ||| ||| ||||| |||    
T  14622611 gggaaatgctaatttgtgctcttaaaacacaagttaatgattcaaatatagaaataatttattggaaggtgtgcatttcattcaatatttaactttctaa 14622512  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    | || ||  ||| |||||||||||| |||||||| ||||||||| || |||||||||||||    
T  14622511 t-aaattggatgaacaaaattttagaaaatattttttcttttgg-ttccttaacatgtgcc 14622453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 582 - 737
Target Start/End: Original strand, 1352752 - 1352906
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    |||||||||||||||||||| |  | |||||||| | ||||||||||||||  ||| ||||||||||||   ||| ||||||||||| ||||||||||||    
T  1352752 aaatgctaacttgtgccctttagcctcaaattaacggatcaaatatagaaacgattaattgaaatgtgtatgttaaatttaatctttaactttttaatga 1352851  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    | || ||||||||| |||| ||  ||||||| ||||||| | ||||||||||||||    
T  1352852 a-ttgaatgcacaatatttaagagaatattttttctttttgatttcttaacatgtg 1352906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 581 - 743
Target Start/End: Original strand, 25983031 - 25983192
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    |||||||||||||||| ||| ||  || || ||||||  | ||||||||||||||||||||| ||| ||||||||  ||||||||||| |||||| ||      
T  25983031 gaaatgctaacttgtgtcctcaagacataagttaatgatttaaatatagaaataatttattggaatatgtgcattgcatttaatctttaacttttcaa-a 25983129  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    || || |||||||||||||||||  ||||||| ||||||| | |||||||||||||| |||||    
T  25983130 aaattgaatgcacaaaattttagagaatatttattcttttaggtttcttaacatgtgtcctaa 25983192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 2e-23
Query Start/End: Original strand, 398 - 541
Target Start/End: Original strand, 4381683 - 4381824
Alignment:
Q  398 cacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctctt 496  Q
    |||||||||||| ||||||||| |||  ||||||||| |||||||||||||||||  |||||  |||||||||||||| || || |||||||||  ||||    
T  4381683 cacaaatgataaatatttgggcacactaatatcaaatagaaaaatttaaaacaaaattaattagatcacatcaatcaa-attatatagttttat--tctt 4381779  T
Q  497 ttaatttttgtatttgatgtgagtgtgcccaaatatttattattt 541  Q
    |||||||||| |||||||||||||||  | |||||||||| ||||    
T  4381780 ttaatttttgcatttgatgtgagtgtatctaaatatttatcattt 4381824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-23
Query Start/End: Original strand, 377 - 568
Target Start/End: Complemental strand, 41982637 - 41982444
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    |||||||| ||| || ||||  ||||||||||| ||||||||| ||| || |||||||  ||||||||||||||||  |||||  ||| |||||||||||    
T  41982637 aaactcttctatagacacaaatacaaatgataaatatttgggcacactcacatcaaatgaaaaaatttaaaacaaaaataattagatcccatcaatcaac 41982538  T
Q  476 atcatttagttttattc-tcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    ||||||||||||| ||| | ||||||||| |  |||| ||||||||||| | |||||||||| |||| | ||||| || ||| |||| ||||||    
T  41982537 atcatttagtttttttctttttttaatttatacatttaatgtgagtgtgtctaaatatttatcatttgtatttgtatctataaaagagtttctc 41982444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 9064557 - 9064731
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    ||||||| |||| |||||||| |||||| |||||||||||||||||||||||||| ||||||| | ||||||||  ||||||| ||   | |||| |||     
T  9064557 ataaccataagtgattcatctcgcacaaagtgtgcaaaagagaatcacttaaaaaagatacaata-tcagttcatcggtgccacaatacccgacaccatg 9064655  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
      | |  ||| |||||||||||||||||||| |||||  ||||||||||||| |||||||||||| ||||||||||    
T  9064656 attactaaaccaaaacaaagaagattacatgtaaatacccatacaagacatagggtgttgccaccagtcatggtaa 9064731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 582 - 702
Target Start/End: Original strand, 30721368 - 30721487
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||||||| | |||| ||||||| ||||| | |||||||||||||| ||||||||||||||||||||| ||||||| ||| | |||||||||     
T  30721368 aaatgttaacttgtgtctttaaggcacaaactaatgaaacaaatatagaaatagtttattgaaatgtgtgcattacatttaatttttaattttttaatg- 30721466  T
Q  682 attttaatgcacaaaatttta 702  Q
    | || ||||||||||||||||    
T  30721467 agttgaatgcacaaaatttta 30721487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 579 - 734
Target Start/End: Original strand, 19961520 - 19961674
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| ||| ||||| |||||   ||||| |||||| ||||||  |||||||| ||||||| |||||||| |||  ||||||||||| | |||||||    
T  19961520 gggaaatgttaatttgtgtccttatgacacaagttaatgaatcaaaagtagaaatagtttattggaatgtgtgtatttcatttaatctttaattttttaa 19961619  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacat 734  Q
    | || || ||||||||||||||||   ||||||||||||||||| |||||||||||    
T  19961620 t-aaattgaatgcacaaaattttaaagaatatttcttcttttggatttcttaacat 19961674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 622 - 737
Target Start/End: Complemental strand, 40298374 - 40298260
Alignment:
Q  622 aaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttg 721  Q
    ||||||| ||||||||||||  ||||||| ||||| ||||||||||| || |||||||||| || ||||||||||||||||| |||||||| |||||||     
T  40298374 aaatataaaaataatttattagaatgtgtacattacatttaatctttaacattttaatgaa-ttgaatgcacaaaattttagaaaatatttattctttta 40298276  T
Q  722 gttttcttaacatgtg 737  Q
      ||||||||||||||    
T  40298275 aatttcttaacatgtg 40298260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 55; E-Value: 9e-22
Query Start/End: Original strand, 581 - 743
Target Start/End: Complemental strand, 13951255 - 13951094
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    |||||| |||||| || ||| ||  ||||||||||||  ||||||||| ||||||||||||| ||  ||||||||   |||||||||| ||||||||||     
T  13951255 gaaatgttaacttttggcctcaagacacaaattaatgattcaaatataaaaataatttattggaaaatgtgcattgcgtttaatctttaactttttaatc 13951156  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    || || |||||||||||||| |||||||||||||| ||||   | ||||||||| ||||||||    
T  13951155 aa-ttaaatgcacaaaatttaaggaaatatttctttttttaagtgtcttaacatctgccctaa 13951094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 579 - 729
Target Start/End: Complemental strand, 18334546 - 18334397
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| ||||||||||||| |  |||||| ||||||  ||||||||||||| || |||||  ||||||||||||  ||||||| ||  |||||||||    
T  18334546 gggaaatgttaacttgtgccctgagggcacaagttaatgattcaaatatagaaaaaacttatttgaatgtgtgcattgcatttaatattaaactttttaa 18334447  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttctt 729  Q
    |  |||| ||||||||||||||||| |||| ||| ||||||| | ||||||    
T  18334446 t-catttaaatgcacaaaattttagaaaatgtttattcttttaggtttctt 18334397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 588 - 736
Target Start/End: Original strand, 25693631 - 25693782
Alignment:
Q  588 taacttgtgcccttaaa-gcacaaattaatgcatcaaatatagaaataatttattgaaat---gtgtgcattatatttaatctttgactttttaatgaat 683  Q
    |||||||||||| |||| | ||||||||||   ||||||||| ||||||||||||| |||   |||||||||| ||||||||||| |||||||||| ||     
T  25693631 taacttgtgcccctaaaaggacaaattaataattcaaatataaaaataatttattggaataatgtgtgcattaaatttaatctttaactttttaat-aaa 25693729  T
Q  684 tttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    || ||| |||||||||| |   ||||| ||||||||| |||||||||||||||    
T  25693730 ttgaattcacaaaatttaaaagaatatctcttcttttagttttcttaacatgt 25693782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 577 - 722
Target Start/End: Original strand, 3938371 - 3938515
Alignment:
Q  577 ttgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttttt 676  Q
    |||||||||  ||| |||||| |||||  ||||| ||||||  | ||||||||||||||||||||| ||||| ||||||  ||||||| | | | |||||    
T  3938371 ttgggaaatattaatttgtgctcttaagacacaagttaatgatttaaatatagaaataatttattggaatgtatgcattgcatttaatatctaatttttt 3938470  T
Q  677 aatgaattttaatgcacaaaattttaggaaatatttcttcttttgg 722  Q
    |||||| || |||||| |||||||||  ||||||||||||||||||    
T  3938471 aatgaa-ttgaatgcataaaattttaaaaaatatttcttcttttgg 3938515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 607 - 700
Target Start/End: Original strand, 33208414 - 33208506
Alignment:
Q  607 acaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattt 700  Q
    |||| |||||| |||||||||||||||||||||||||||||| || |||| ||||||| ||| ||||||||||||| |  ||||||||||||||    
T  33208414 acaagttaatgaatcaaatatagaaataatttattgaaatgtatgtattaaatttaatatttaactttttaatgaa-tggaatgcacaaaattt 33208506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 576 - 703
Target Start/End: Complemental strand, 15591824 - 15591693
Alignment:
Q  576 attgggaaatgctaacttgtgcccttaaag-----cacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttga 670  Q
    |||| ||||||||||||||||||||||| |     ||||| |||||| |||||||||||||||| ||| |||| |||| ||||||   |||||||||| |    
T  15591824 attgagaaatgctaacttgtgcccttaaggcaagacacaagttaatgaatcaaatatagaaatagtttgttgagatgtatgcattccttttaatctttaa 15591725  T
Q  671 ctttttaatgaattttaatgcacaaaattttag 703  Q
     ||||||||||| || |||||||||||||||||    
T  15591724 ttttttaatgaa-ttgaatgcacaaaattttag 15591693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1053 - 1203
Target Start/End: Complemental strand, 882657 - 882506
Alignment:
Q  1053 atgttgcttttatgaagagatgtaaaaacatttgtaagcttcttggttctaacttctaagtcttggatgggatctgtccccagg--atttttgttg--ct 1148  Q
    |||||| |||||| |||||||||| |||||||||||||| |||||  |||   ||||||||||||| |||||| |||||| |||  | | ||||||  ||    
T  882657 atgttgtttttattaagagatgtataaacatttgtaagcatcttg--tcttcgttctaagtcttgggtgggatgtgtcccgaggctactgttgttgctct 882560  T
Q  1149 acatttgtaaggattcacatcttttttatttaacgaataccttccacatcaaaag 1203  Q
    ||||| ||||||||||| ||| ||||||||||| ||||| ||||||| |||||||    
T  882559 acattcgtaaggattcatatc-tttttatttaatgaatatcttccacttcaaaag 882506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 612 - 737
Target Start/End: Original strand, 4746049 - 4746173
Alignment:
Q  612 ttaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatt 711  Q
    |||||| |||||||||||||||||||||||| ||||| |  ||| |||||| ||||| ||||||||||||| || |||| |||| ||||||   ||||||    
T  4746049 ttaatgaatcaaatatagaaataatttattggaatgtatttattttatttattctttaactttttaatgaa-ttgaatgtacaagattttatagaatatt 4746147  T
Q  712 tcttcttttggttttcttaacatgtg 737  Q
    |||| |||||  ||| ||||||||||    
T  4746148 tctttttttgagtttattaacatgtg 4746173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1222 - 1273
Target Start/End: Complemental strand, 882456 - 882405
Alignment:
Q  1222 acttagtttcagatgatcatctatattatcgacctaatgccattctaatctc 1273  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  882456 acttagtttcaaatgttcatctatattatcgacctaatgccattctaatctc 882405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 730858 - 730784
Alignment:
Q  605 gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaat 679  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||| |||| ||||||||||  ||||||||||    
T  730858 gcacaaattaatgattcaaatatagaaataatttattagaatgtgtgtattacatttaatcttgaactttttaat 730784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 605 - 715
Target Start/End: Complemental strand, 14310036 - 14309927
Alignment:
Q  605 gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagg 704  Q
    |||||| ||||||  |||||||||||||||||| |||| ||| ||| ||||  |||||| |||| |||||||||| || || ||||||||||||||||      
T  14310036 gcacaagttaatgattcaaatatagaaataattgattggaatatgtacattgcatttaaactttaactttttaatcaa-ttaaatgcacaaaattttaaa 14309938  T
Q  705 aaatatttctt 715  Q
    |||||||||||    
T  14309937 aaatatttctt 14309927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 504
Target Start/End: Complemental strand, 4650398 - 4650316
Alignment:
Q  426 tatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatt----tagttttattctcttttaatttt 504  Q
    ||||||||  ||||||||||||||||  |||||  |||||||||||||||||||||    |||||||||||||||||||||||    
T  4650398 tatcaaatgaaaaaatttaaaacaaaaataattagatcacatcaatcaacatcatttagatagttttattctcttttaatttt 4650316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 622 - 743
Target Start/End: Complemental strand, 28574934 - 28574814
Alignment:
Q  622 aaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttg 721  Q
    |||| |||||||||| ||||| |||  |||||||| | ||||| ||| |  ||||||||||||  |||||||||| ||| || ||||||||||| |||||    
T  28574934 aaatgtagaaataatgtattggaatacgtgcattaaacttaatatttaatgttttaatgaatta-aatgcacaaagtttaagaaaatatttctttttttg 28574836  T
Q  722 gttttcttaacatgtgccctaa 743  Q
    | ||| ||||||||||||||||    
T  28574835 gattttttaacatgtgccctaa 28574814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 31274042 - 31273961
Alignment:
Q  440 atttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtg 521  Q
    ||||||||||||  |||||  ||||||| |||||| |||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  31274042 atttaaaacaaaaataattagatcacataaatcaatatcatttaattttattctcttttaatttttggatttggtgttagtg 31273961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 4366060 - 4365980
Alignment:
Q  80 tatatttattgttgaccgccatcttttttccaccaaccttcatgatttccgcaaagccacgttttgatattggttaattat 160  Q
    ||||||||||||| |||||||||||||||||| |||||| |||||  ||| |||| | | |||||| ||||||||||||||    
T  4366060 tatatttattgttaaccgccatcttttttccatcaacctccatgaactccacaaaactatgttttggtattggttaattat 4365980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 647 - 743
Target Start/End: Complemental strand, 7406311 - 7406216
Alignment:
Q  647 gtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||||||||| |||||||||||  ||||||||||| ||  |||||| |||||||||  ||||||||||||||||   |||||||||||||| |||||    
T  7406311 gtgtgcattacatttaatctttagctttttaatgagttg-aatgcataaaattttataaaatatttcttcttttatgtttcttaacatgtgtcctaa 7406216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 499 - 561
Target Start/End: Original strand, 41982571 - 41982633
Alignment:
Q  499 aatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    |||||||  ||||||||||||||||||||||||||||| |||| | |||||||| ||||||||    
T  41982571 aattttttcatttgatgtgagtgtgcccaaatatttatcatttgtatttgtgtctatagaaga 41982633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 620 - 720
Target Start/End: Original strand, 4702556 - 4702656
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatc-tttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttctt 718  Q
    |||||||||||||||| |||||| ||||||||| || |||||| || ||| |||||| |||| | || |||||||||||||||||  || ||||||||||    
T  4702556 tcaaatatagaaataaattattggaatgtgtgctttttatttagtcttttaacttttaaatgca-ttgaatgcacaaaattttagagaacatttcttctt 4702654  T
Q  719 tt 720  Q
    ||    
T  4702655 tt 4702656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 620 - 743
Target Start/End: Complemental strand, 41816638 - 41816516
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttct-tctt 718  Q
    ||||| ||||||||||| ||||| ||||||| ||||| ||||||| ||| | | ||||| ||| || |||||||||||||| ||| |||| |||| | ||    
T  41816638 tcaaaaatagaaataatgtattggaatgtgtacattaaatttaat-ttttaatgtttaaagaa-ttaaatgcacaaaatttaagggaataattctatttt 41816541  T
Q  719 ttggttttcttaacatgtgccctaa 743  Q
    || | ||||||||||||||||||||    
T  41816540 ttagatttcttaacatgtgccctaa 41816516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 41368146 - 41368095
Alignment:
Q  454 taatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    ||||||||||| |||||||||||||||||  |||||||||||| ||||||||    
T  41368146 taatttaatcatatcaatcaacatcatttgattttattctcttgtaattttt 41368095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 646 - 739
Target Start/End: Complemental strand, 42179877 - 42179786
Alignment:
Q  646 tgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    |||||||||| || ||||||||| |||||||||| ||||  |||||| ||||||| ||  ||||||| ||||||| | ||||||||||||||||    
T  42179877 tgtgtgcattgtaattaatctttaactttttaattaatta-aatgcataaaattt-agagaatattttttcttttaggtttcttaacatgtgcc 42179786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 609 - 680
Target Start/End: Complemental strand, 3257547 - 3257476
Alignment:
Q  609 aaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    ||||||||  |||||||||| ||||| ||||||| ||| ||||||||  ||||||||||| |||||| ||||    
T  3257547 aaattaataaatcaaatataaaaatagtttattggaatatgtgcatttcatttaatctttaacttttgaatg 3257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 700
Target Start/End: Original strand, 1355771 - 1355864
Alignment:
Q  606 cacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattt 700  Q
    ||||| |||||| || ||||||||||| | || |||||||| |||  |||| ||||||||||| || ||||||| || ||||||||| |||||||    
T  1355771 cacaagttaatggattaaatatagaaacagttaattgaaatatgtatattaaatttaatctttaacattttaat-aaatttaatgcataaaattt 1355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 566
Target Start/End: Original strand, 2846439 - 2846497
Alignment:
Q  508 atttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttc 566  Q
    |||||||||||||| | |||||||||||| |||| || |||||| ||||||||| ||||    
T  2846439 atttgatgtgagtgcgtccaaatatttatcatttgtgcttgtgttcatagaagagtttc 2846497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 22099166 - 22099132
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||| ||||||||||||||||||||||||||    
T  22099166 attcatctcgcacaaggtgtgcaaaagagaatcac 22099132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 30873123 - 30873085
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatg 617  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  30873123 gggaaatgctaacttgtgcccttaaggcacaagttaatg 30873085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 582 - 679
Target Start/End: Original strand, 16843866 - 16843963
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaat 679  Q
    ||||||||||||| | ||||||  || |  |||||| ||||||||||| |||  ||| ||| ||||||||||||| ||||||| ||||| ||| ||||    
T  16843866 aaatgctaacttgggtccttaagacataggttaatgaatcaaatatagtaattttttgttggaatgtgtgcattaaatttaatttttgaatttgtaat 16843963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 249
Target Start/End: Original strand, 27528331 - 27528360
Alignment:
Q  220 ttcatcttgcacaaggtgtgcaaaagagaa 249  Q
    ||||||||||||||||||||||||||||||    
T  27528331 ttcatcttgcacaaggtgtgcaaaagagaa 27528360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 7e-78; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-78
Query Start/End: Original strand, 186 - 378
Target Start/End: Original strand, 44521475 - 44521669
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44521475 acaagccaaaatgaatttt-ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 44521573  T
Q  286 ccataaatacagacatcataccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  44521574 ccataaatacagacatcatactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaa 44521669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-59
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 7282552 - 7282727
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||      
T  7282552 ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttgaaaacgatacaaaattcagttcactggtgccataaatacagacatcaag 7282651  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    | |||||||  ||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  7282652 ctttcacaatcaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaa 7282727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 582 - 740
Target Start/End: Complemental strand, 20009807 - 20009652
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| |||||| ||||||||||||| || |||| | |||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||| || |    
T  20009807 aaatgttaacttatgcccttaaagcataagttaa-gaatcaaatatagaaataatttattgaaatgtgt-cattacatttaatctgtaacttttttataa 20009710  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccc 740  Q
    |||  ||||||||||||||||| |||||||||||||||||  ||| |||||||||||||    
T  20009709 attg-aatgcacaaaattttagaaaatatttcttcttttgaattttttaacatgtgccc 20009652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-26
Query Start/End: Original strand, 581 - 730
Target Start/End: Complemental strand, 48047039 - 48046893
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    ||||||||||||||||||||||| |||||| |||||  ||||||||||||||| | |||||| ||||||||||||| ||||||| |||  | ||||||||    
T  48047039 gaaatgctaacttgtgcccttaaggcacaagttaataaatcaaatatagaaattaattattggaatgtgtgcattacatttaatatttagccttttaatg 48046940  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttctta 730  Q
    || || |||||||  ||||||||  || |||||||||||||| |||||||    
T  48046939 aa-ttaaatgcac--aattttagagaaaatttcttcttttgggtttctta 48046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 573 - 743
Target Start/End: Original strand, 23358416 - 23358586
Alignment:
Q  573 attattgggaaatgctaacttgtgccct-taaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgac 671  Q
    |||||||||||||||||||||||| | | ||| | |||| |||||| ||||| |||| ||||| |||||| ||||| ||| |||||||||||||||| ||    
T  23358416 attattgggaaatgctaacttgtgtcttctaaggtacaagttaatgaatcaattataaaaatattttatttaaatgcgtgtattatatttaatctttaac 23358515  T
Q  672 tttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
     |||| ||||| || |||||||| |||||||  ||||||||||||||||   ||| |||||||||| |||||    
T  23358516 cttttcatgaa-ttgaatgcacacaattttaaaaaatatttcttcttttaagttttttaacatgtgtcctaa 23358586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 582 - 739
Target Start/End: Complemental strand, 40019917 - 40019761
Alignment:
Q  582 aaatgctaacttgtgcccttaaa-gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    ||||| ||||||||||||| ||| |||||| |||||| |||||||||||||| || |||||||||||||||||||  ||||||| ||| ||||||||||     
T  40019917 aaatgttaacttgtgccctcaaaagcacaagttaatg-atcaaatatagaaaaaacttattgaaatgtgtgcattgcatttaatatttaactttttaat- 40019820  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
     |||| ||| ||||||| |||||  |||  |||||||||| | ||||||||||||||||    
T  40019819 catttaaatacacaaaagtttagagaatgcttcttcttttaggtttcttaacatgtgcc 40019761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 588 - 743
Target Start/End: Complemental strand, 48634072 - 48633918
Alignment:
Q  588 taacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaatttta 687  Q
    ||||||||||||||||  ||||| |||||  || ||||||| ||||| ||||||| ||||||| |||| | |||| ||||| ||||||||||||| || |    
T  48634072 taacttgtgcccttaagacacaagttaataaataaaatataaaaatagtttattggaatgtgtacattgtctttagtctttaactttttaatgaa-ttga 48633974  T
Q  688 atgcacaaaattttag-gaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||| |||||||||| ||||| ||| ||||||| | ||||||||||||||||||||    
T  48633973 atgcataaaattttagagaaat-ttttttcttttaggtttcttaacatgtgccctaa 48633918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-21
Query Start/End: Original strand, 582 - 735
Target Start/End: Original strand, 25971417 - 25971568
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||||||| | |||| | |||||||||| ||||||||||| ||||  ||||||| ||||  ||||||| ||||||| ||| | ||||||||||    
T  25971417 aaatgttaacttgtgtctttaaggtacaaattaatacatcaaatataaaaattgtttattggaatgcatgcattacatttaatatttaattttttaatga 25971516  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatg 735  Q
    | || |||||||||||||||||  |||||||||| |||| | ||||||||||||    
T  25971517 a-ttgaatgcacaaaattttagtgaatatttctt-tttttgatttcttaacatg 25971568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 393 - 550
Target Start/End: Complemental strand, 9417294 - 9417136
Alignment:
Q  393 acaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttatt 491  Q
    |||| |||||||||||| ||||||||| ||   | ||||||| ||||||||||||  |||  |||||  |||| || ||||||||||||||| |||||||    
T  9417294 acaaccacaaatgataaatatttgggcacagttacatcaaatggaaaaatttaaagtaaaaataattagatcatattaatcaacatcatttaattttatt 9417195  T
Q  492 ctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtg 550  Q
    ||||||||||||| | |||||||||| |||||   |||||||||| |||| || |||||    
T  9417194 ctcttttaattttggcatttgatgtgggtgtgtttaaatatttataatttgtggttgtg 9417136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 619 - 740
Target Start/End: Original strand, 37828356 - 37828477
Alignment:
Q  619 atcaaatatagaaataatttattgaaatgtgtgcattatatttaatc-tttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttct 717  Q
    |||||||||||||||| ||||||| |||| ||| |||| |||||||| ||| |||||||||| || || |||||||||||||| ||  ||||||||||||    
T  37828356 atcaaatatagaaatagtttattggaatgcgtgtattaaatttaatcttttaactttttaat-aaattgaatgcacaaaatttaagagaatatttcttct 37828454  T
Q  718 tttggttttcttaacatgtgccc 740  Q
    ||| | ||||||||||| |||||    
T  37828455 tttaggtttcttaacatatgccc 37828477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 635 - 743
Target Start/End: Original strand, 17354394 - 17354501
Alignment:
Q  635 atttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacat 734  Q
    |||||||| |||||| ||||   ||||||||||| |||||||||| ||||  |||||| |||||||||   ||||||||||||||||| |||||||||||    
T  17354394 atttattggaatgtgggcatatcatttaatctttaactttttaatcaatta-aatgcataaaattttatagaatatttcttcttttgggtttcttaacat 17354492  T
Q  735 gtgccctaa 743  Q
    |||||||||    
T  17354493 gtgccctaa 17354501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 576 - 668
Target Start/End: Complemental strand, 42306667 - 42306575
Alignment:
Q  576 attgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatcttt 668  Q
    |||||||||||||||||| |||||| || |||||| |||| |  | |||||||||||||||||||||||||| |||||||  |||||||||||    
T  42306667 attgggaaatgctaacttctgccctcaaggcacaagttaacgatttaaatatagaaataatttattgaaatgcgtgcattgcatttaatcttt 42306575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-17
Query Start/End: Original strand, 485 - 571
Target Start/End: Complemental strand, 8170281 - 8170195
Alignment:
Q  485 ttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctcgtt 571  Q
    ||||||||||||||||||||| |||||||||||||| |  | |||||||||| |||| || ||||||| |||||||| |||||||||    
T  8170281 ttttattctcttttaatttttatatttgatgtgagtatatctaaatatttatcatttgtgattgtgtctatagaagactttctcgtt 8170195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 658 - 743
Target Start/End: Complemental strand, 36827891 - 36827807
Alignment:
Q  658 atttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||||| ||| |||| ||||||||||  |||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||    
T  36827891 atttaatttttaacttattaatgaattg-aatgcacaaaattttagagaatatttcttcttttaggtttcttaacatgtgccctaa 36827807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 38736020 - 38735908
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    |||||||| |||| | |||| |||||||||||| || |||||| ||  || |||||||  ||||||||||| ||||  ||||| ||||||||||||||||    
T  38736020 aaactcttctatgaacacaaccacaaatgataaatacttgggcacaatcacatcaaatgaaaaaatttaaagcaaaaataattaaatcacatcaatcaac 38735921  T
Q  476 atcatttagtttt 488  Q
    |||||||| ||||    
T  38735920 atcatttaatttt 38735908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 620 - 738
Target Start/End: Complemental strand, 31289584 - 31289467
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttt 719  Q
    |||||| || ||||||| ||||| |||| |||||| | ||||||||||| |  |||||||||| || |||||||||| ||| ||  |||||||||| |||    
T  31289584 tcaaatgtaaaaataatatattggaatgcgtgcataaaatttaatctttaatgttttaatgaa-ttgaatgcacaaagtttaagataatatttctttttt 31289486  T
Q  720 tggttttcttaacatgtgc 738  Q
    ||  |||||||||||||||    
T  31289485 tgaatttcttaacatgtgc 31289467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 670 - 743
Target Start/End: Complemental strand, 42306341 - 42306269
Alignment:
Q  670 actttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||||||||||||||  |||||||||||||||||  | ||||||||||||||  ||||||||||||||| ||||    
T  42306341 actttttaatgaattg-aatgcacaaaattttagagagtatttcttcttttgagtttcttaacatgtgctctaa 42306269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 638 - 734
Target Start/End: Original strand, 676267 - 676361
Alignment:
Q  638 tattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacat 734  Q
    ||||| |||| || ||||| ||||||||||| |  ||||||||||||  |||||||||||||| ||| |||||||||| |||||| |||||||||||    
T  676267 tattggaatgcgtacattaaatttaatctttaatgttttaatgaattg-aatgcacaaaatttaagggaatatttctt-ttttggatttcttaacat 676361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 622 - 737
Target Start/End: Complemental strand, 43251991 - 43251878
Alignment:
Q  622 aaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttg 721  Q
    ||||||||||||||||||||  ||||||||  ||| ||||||||||| | |||||||| || || |||||| |||||||||   |||||||||| ||||     
T  43251991 aaatatagaaataatttattagaatgtgtgttttacatttaatctttaattttttaatcaa-ttaaatgcataaaattttaaataatatttctt-tttta 43251894  T
Q  722 gttttcttaacatgtg 737  Q
      ||||||||||||||    
T  43251893 agtttcttaacatgtg 43251878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 620 - 718
Target Start/End: Complemental strand, 45671846 - 45671750
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttctt 718  Q
    |||||||||||||||| |||||||||| |||| |||  ||||| | ||| |||||||||| ||  ||||| ||||||||||||  ||| ||||||||||    
T  45671846 tcaaatatagaaataacttattgaaatatgtgtattgcatttattatttaactttttaattaa--ttaattcacaaaattttaaaaaacatttcttctt 45671750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 982 - 1044
Target Start/End: Original strand, 16698432 - 16698494
Alignment:
Q  982 cgtgagttaacttatagtgaacatttttaaaggaataaacaattttaaaagtgagaagagcaa 1044  Q
    |||||||||||| ||  ||||||||||||| ||||| | |||||||||||| |||||||||||    
T  16698432 cgtgagttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaa 16698494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 982 - 1044
Target Start/End: Original strand, 17672668 - 17672730
Alignment:
Q  982 cgtgagttaacttatagtgaacatttttaaaggaataaacaattttaaaagtgagaagagcaa 1044  Q
    |||||||||||| ||  ||||||||||||| ||||| | |||||||||||| |||||||||||    
T  17672668 cgtgagttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaa 17672730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 630 - 712
Target Start/End: Original strand, 25594585 - 25594666
Alignment:
Q  630 aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatattt 712  Q
    ||||||| ||||  ||||||||||||| ||||||||||| |  ||||||| || || |||||||||||||| |||||||||||    
T  25594585 aaataatgtattagaatgtgtgcattaaatttaatctttaatattttaat-aaattgaatgcacaaaatttaaggaaatattt 25594666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 530
Target Start/End: Original strand, 28723755 - 28723848
Alignment:
Q  436 aaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaat 530  Q
    ||||| ||||||||||  | ||||||||||||||||  | | |||| | ||| ||||||||||||||||| ||||| ||||||||||| ||||||    
T  28723755 aaaaaattaaaacaaaacttatttaatcacatcaattgata-cattgaatttcattctcttttaatttttttattttatgtgagtgtgtccaaat 28723848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 31446717 - 31446663
Alignment:
Q  442 ttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctctt 496  Q
    ||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||    
T  31446717 ttaaaacaaaaataatttattcatatcaatcaacatcatttaattttattctctt 31446663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 38735949 - 38736023
Alignment:
Q  494 cttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||| |||||||  ||||||||||| ||||||||| ||||||| |||| || |||||| ||||||||| ||||||    
T  38735949 ctttaaattttttcatttgatgtgattgtgcccaagtatttatcatttgtggttgtgttcatagaagagtttctc 38736023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 10427891 - 10427830
Alignment:
Q  192 caaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    ||||||||| ||  || |||| |||| |||||||| ||||||||||||||||||||||||||    
T  10427891 caaaatgaaattaaatcaccaaaagtgattcatctcgcacaaggtgtgcaaaagagaatcac 10427830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 568
Target Start/End: Complemental strand, 29407748 - 29407675
Alignment:
Q  495 ttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    ||||||||||| |||||||||||| ||||  ||||||||||| |||| || |||| || |||||||| ||||||    
T  29407748 ttttaatttttctatttgatgtgaatgtgttcaaatatttatcatttgtggttgtatctatagaagagtttctc 29407675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 530
Target Start/End: Original strand, 37666563 - 37666650
Alignment:
Q  442 ttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaat 530  Q
    ||||||||||  ||||||| |||||||||| || |||||| | ||| ||||||||| | |||||  |||| ||||||||||||||||||    
T  37666563 ttaaaacaaaactaatttagtcacatcaattaatatcattgaatttcattctcttt-attttttccattttatgtgagtgtgcccaaat 37666650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 561
Target Start/End: Original strand, 13582681 - 13582780
Alignment:
Q  462 tcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    |||||||||  || |||||| | ||||||||||||||||||||| |  || |||||||| |  |||||| ||| | ||||| ||||||| ||||||||||    
T  13582681 tcacatcaagtaatatcattgaattttattctcttttaatttttttcatttatgtgagtatatccaaatctttttgatttaggtttgtgaccatagaaga 13582780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 494
Target Start/End: Complemental strand, 30572621 - 30572539
Alignment:
Q  411 atttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctc 494  Q
    |||||||| ||| || ||||||| |||||||| ||||||||  |||| || | ||||||||||||||||| || ||||||||||    
T  30572621 atttgggcacactcacatcaaatggaaaaatt-aaaacaaaaataatatatttacatcaatcaacatcatctaattttattctc 30572539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 578 - 617
Target Start/End: Complemental strand, 33645353 - 33645314
Alignment:
Q  578 tgggaaatgctaacttgtgcccttaaagcacaaattaatg 617  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  33645353 tgggaaatgctaacttgtgcccttaaggcacaagttaatg 33645314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 621 - 684
Target Start/End: Complemental strand, 43951997 - 43951934
Alignment:
Q  621 caaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaatt 684  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||| ||| |  ||||||||||||    
T  43951997 caaatgtagaaataatgtattggaatgtgtgcattaaatttaatatttaatattttaatgaatt 43951934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 9417239 - 9417313
Alignment:
Q  494 cttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||| |||||||  ||||||||| | ||||||||||||||||| |||| || ||||||  |||||||| ||||||    
T  9417239 ctttaaatttttccatttgatgtaactgtgcccaaatatttatcatttgtggttgtgtttatagaagagtttctc 9417313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 25011731 - 25011694
Alignment:
Q  216 gtaattcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  25011731 gtaattcatctcgcacaaggcgtgcaaaagagaatcac 25011694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 707 - 736
Target Start/End: Original strand, 32903088 - 32903117
Alignment:
Q  707 atatttcttcttttggttttcttaacatgt 736  Q
    ||||||||||||||||||||||||||||||    
T  32903088 atatttcttcttttggttttcttaacatgt 32903117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 45403565 - 45403634
Alignment:
Q  436 aaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||| ||||| ||| ||||||||||||||||| |||| ||| |||| || | |||||||| |||||||    
T  45403565 aaaaatataaaagaaaagtaatttaatcacatcattcaatatcgtttaattctcttctctttaaattttt 45403634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-77; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-77
Query Start/End: Original strand, 186 - 378
Target Start/End: Complemental strand, 22197722 - 22197529
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    ||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22197722 acaagccaaaaagaatttt-ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 22197624  T
Q  286 ccataaatacagacatcataccttcacaactaaaacaaagaagattacatgaaaata--catacaagacataggtgttgccacccgtcatggtaa 378  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  22197623 ccataaatacagacaccatactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacataggtgttgccaccagtcatggtaa 22197529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-63
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 37113255 - 37113080
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  37113255 ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaggtcagttcactggtgccataaatacagacatcgtg 37113156  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    | |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  37113155 ctttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaa 37113080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-49
Query Start/End: Original strand, 583 - 743
Target Start/End: Complemental strand, 55323099 - 55322940
Alignment:
Q  583 aatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaa 682  Q
    ||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||    
T  55323099 aatgctaacttgtgcccttaaggcacaagttagtgaatcaaatatagaaataatttattggaatttgtgcattacatttaatctttaactttttaatgaa 55323000  T
Q  683 ttttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
     || ||||||||||||||||  ||||||||||||||| || ||||||||||||||||||||    
T  55322999 -ttgaatgcacaaaattttaaaaaatatttcttctttggggtttcttaacatgtgccctaa 55322940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-37
Query Start/End: Original strand, 579 - 743
Target Start/End: Original strand, 53133447 - 53133610
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| |||||||||||||||| |||||| |||||| | ||||||||||||||| | |||| ||| ||||||||| ||||||||||| | |||||||    
T  53133447 gggaaatgttaacttgtgcccttaaggcacaagttaatgaaacaaatatagaaataactcattggaatatgtgcattacatttaatctttaaatttttaa 53133546  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    || | || ||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||||    
T  53133547 tg-agttgaatgcgcaaaattttataaaatatttcttcttttaggtttcttaacatgtgccctaa 53133610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-35
Query Start/End: Original strand, 202 - 367
Target Start/End: Original strand, 8683969 - 8684137
Alignment:
Q  202 ttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacat 301  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||| ||  ||||| |||| |||||||| ||||||||||     
T  8683969 ttttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttgaaaaggatataattgtcagctcaccggtgccatgaatacagacac 8684068  T
Q  302 cataccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacc 367  Q
    | |   |||| ||| ||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||    
T  8684069 cgtgatttcaaaaccaaaacaaagaagattacataaaaatacccatacaagacatagggtgttgccacc 8684137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-35
Query Start/End: Original strand, 579 - 743
Target Start/End: Complemental strand, 49250201 - 49250038
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| |||||||| ||||||| | |||  ||||| ||||||||||| ||||| ||||||||||||| || |||| ||||||||||| |||||||||    
T  49250201 gggaaatgttaacttgtacccttaaggtacaggttaatacatcaaatataaaaatagtttattgaaatgtctgtattacatttaatctttaactttttaa 49250102  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||| || ||||||||||||||||   ||||||| ||||||||| ||||||||||| ||||||||    
T  49250101 tgaa-ttgaatgcacaaaattttaatgaatatttattcttttggatttcttaacatttgccctaa 49250038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-32
Query Start/End: Original strand, 582 - 741
Target Start/End: Complemental strand, 50328531 - 50328373
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||||||| |||||| | |||| |||||| |||| |||||||||||   ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  50328531 aaatgttaacttgtgtccttaaggtacaagttaatgaatcagatatagaaataggatattggaatgtgtgcattacatttaatctttaactttttaatga 50328432  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccct 741  Q
    | ||  ||||||||||||||||  |||||||||| ||| || ||||||||||||||||||    
T  50328431 a-ttggatgcacaaaattttagagaatatttcttttttggggtttcttaacatgtgccct 50328373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-31
Query Start/End: Original strand, 619 - 737
Target Start/End: Complemental strand, 41236138 - 41236021
Alignment:
Q  619 atcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttctt 718  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| || || ||||||||||||||||  ||||||||||||||    
T  41236138 atcaaatatagaaataatttattaaaatgtgtgcattacatttaatctttaactttttaat-aaattaaatgcacaaaattttataaaatatttcttctt 41236040  T
Q  719 ttggttttcttaacatgtg 737  Q
    || | ||| ||||||||||    
T  41236039 ttagattttttaacatgtg 41236021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-30
Query Start/End: Original strand, 579 - 739
Target Start/End: Original strand, 26740738 - 26740897
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| |||||||||| |||||  ||||  |||||| |||||||||| ||||| ||||||| ||| |||| |||| || |||||||| |||||||||    
T  26740738 gggaaatgttaacttgtgctcttaagacacacgttaatgaatcaaatataaaaatattttattggaatatgtgtattacatgtaatctttaactttttaa 26740837  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    |||| || |||||||||||||||||  ||||||||||||||||  ||||||| ||||||||    
T  26740838 tgaa-ttgaatgcacaaaattttagagaatatttcttcttttgaatttcttagcatgtgcc 26740897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 6e-29
Query Start/End: Original strand, 625 - 743
Target Start/End: Original strand, 47388488 - 47388605
Alignment:
Q  625 tatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggtt 724  Q
    |||| ||||| |||||||||||||||| |||| ||||||||||| || ||||||||||||  |||| ||||||||||||  ||||||||||||||||| |    
T  47388488 tataaaaatattttattgaaatgtgtgtattacatttaatctttaaccttttaatgaattg-aatgtacaaaattttagagaatatttcttcttttggat 47388586  T
Q  725 ttcttaacatgtgccctaa 743  Q
    |||||||||||||||||||    
T  47388587 ttcttaacatgtgccctaa 47388605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-28
Query Start/End: Original strand, 582 - 683
Target Start/End: Original strand, 9319862 - 9319963
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| |||| ||||||||||| |||||| |||||  |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  9319862 aaatgttaacgtgtgcccttaaggcacaacttaattaatcaaatataaaaataatttattgcaatgtgtgcattatatttaatctttaactttttaatga 9319961  T
Q  682 at 683  Q
    ||    
T  9319962 at 9319963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 579 - 743
Target Start/End: Original strand, 46393122 - 46393285
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| ||||||||| |||||| ||| || |||||| || |||  |||||||| ||||||  ||||||||||||  |||| || |||  ||||||||    
T  46393122 gggaaatgttaacttgtgtccttaaggcataagttaatgtattaaaagtagaaatagtttattagaatgtgtgcatttcatttcatttttacctttttaa 46393221  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||||  |||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||||    
T  46393222 tgaattg-aatgcacacaattttagagaatatttattcttttggttttcttaacatgtgctctaa 46393285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 578 - 684
Target Start/End: Complemental strand, 31217067 - 31216961
Alignment:
Q  578 tgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttttta 677  Q
    ||||||||||||||||||||||||||  ||||| |||||  |||||||||||||||  ||||||| || ||||| |||| ||||||||||| ||||||||    
T  31217067 tgggaaatgctaacttgtgcccttaagacacaagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaacttttta 31216968  T
Q  678 atgaatt 684  Q
    |||||||    
T  31216967 atgaatt 31216961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 607 - 737
Target Start/End: Original strand, 42674026 - 42674155
Alignment:
Q  607 acaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaa 706  Q
    |||| |||||| | |||||||| |||||||| |||| ||||| ||||||||||||||||||| | ||||||||| | || ||||||||||||||||  ||    
T  42674026 acaagttaatgaaacaaatataaaaataattcattggaatgtatgcattatatttaatctttaattttttaatg-agttgaatgcacaaaattttataaa 42674124  T
Q  707 atatttcttcttttggttttcttaacatgtg 737  Q
    ||||||||||||||   ||||||||||||||    
T  42674125 atatttcttcttttaagtttcttaacatgtg 42674155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 202 - 378
Target Start/End: Complemental strand, 6453583 - 6453409
Alignment:
Q  202 ttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacat 301  Q
    ||||||||  |||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||||||  |||||||||| |||||||| |||||| |||     
T  6453583 ttttataattagaagtgattcatctcgcacaaggtgtgcaaaagagaataacttgaaaactatacaattgtcagttcaccggtgccatgaatacaaacac 6453484  T
Q  302 cataccttcacaactaaaacaaagaagattacatgaaa--atacatacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    | ||  ||||     ||| ||||||| ||||||| |||  || ||||||||||||| |||||||||||| ||||||||||    
T  6453483 cgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaa 6453409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 574 - 685
Target Start/End: Original strand, 38354247 - 38354358
Alignment:
Q  574 ttattgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactt 673  Q
    |||||| |||||| ||||||||| ||||||   |||| |||||| |||||||||||||||||||||||||||||| ||||||| | ||||| ||| ||||    
T  38354247 ttattgagaaatgttaacttgtgtccttaagatacaagttaatgaatcaaatatagaaataatttattgaaatgtatgcattacaattaatgtttaactt 38354346  T
Q  674 tttaatgaattt 685  Q
    |||||| |||||    
T  38354347 tttaataaattt 38354358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 620 - 735
Target Start/End: Original strand, 45891311 - 45891425
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttt 719  Q
    ||||||||||||||| ||||||||| | ||||||||| ||||||||||| ||||||||||||| || | |||||||||||||||  ||||| ||||||||    
T  45891311 tcaaatatagaaatagtttattgaagtttgtgcattacatttaatctttaactttttaatgaa-ttaattgcacaaaattttagagaatatatcttcttt 45891409  T
Q  720 tggttttcttaacatg 735  Q
    |   ||||||||||||    
T  45891410 taagtttcttaacatg 45891425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-21
Query Start/End: Original strand, 454 - 551
Target Start/End: Complemental strand, 53142220 - 53142123
Alignment:
Q  454 taatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgt 551  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||  ||||||| | |||||| | |||||||||| ||||||| ||||||    
T  53142220 taattaaatcacatcaatcaacatcatttaattttattttcttttaatttttacatttgatatcagtgtgtctaaatatttatcatttatggttgtgt 53142123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 6e-20
Query Start/End: Original strand, 627 - 734
Target Start/End: Original strand, 4442248 - 4442354
Alignment:
Q  627 tagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggtttt 726  Q
    |||||||| ||||||||||||||||||||  |||||| |||| |||||||| |||| || |||||| | ||||||||  ||||||||||||||| |||||    
T  4442248 tagaaatagtttattgaaatgtgtgcatttcatttaaactttaactttttagtgaa-ttgaatgcaaataattttagagaatatttcttctttttgtttt 4442346  T
Q  727 cttaacat 734  Q
    ||||||||    
T  4442347 cttaacat 4442354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 27764038 - 27764116
Alignment:
Q  427 atcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||||||||| |||||||||||||||||    
T  27764038 atcaaatgcaaaaatttaaaacaaaaataattaaatcacatcaatcaatatcatttagtttcattctcttttaattttt 27764116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 634 - 734
Target Start/End: Original strand, 8171077 - 8171177
Alignment:
Q  634 aatttattgaaatgtgtgcattatatttaatc-tttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaac 732  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||   ||||||||||||||||  ||| |||||    
T  8171077 aatttattgaaatgtgtgcattatatttaatcttttaactttttaat-aaattgaatgcacaaaattttaatgaatatttcttcttttgagttttttaac 8171175  T
Q  733 at 734  Q
    ||    
T  8171176 at 8171177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 580 - 741
Target Start/End: Complemental strand, 34119061 - 34118901
Alignment:
Q  580 ggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaat 679  Q
    ||||||| ||| ||||||||| ||  ||||| ||||||  |||||||||||||   ||||||||||| ||||||||  ||| ||| ||| ||||||||||    
T  34119061 ggaaatgttaatttgtgccctcaagacacaagttaatgattcaaatatagaaaatttttattgaaatatgtgcattgcattcaatatttaactttttaat 34118962  T
Q  680 gaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccct 741  Q
      |||| ||||||||||||||||   |||||||  |||||| | ||||||||||||||||||    
T  34118961 -catttaaatgcacaaaattttatagaatatttactcttttaggtttcttaacatgtgccct 34118901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 605 - 741
Target Start/End: Complemental strand, 31204445 - 31204310
Alignment:
Q  605 gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagg 704  Q
    |||||| |||||  |||||||||||||||  ||||||| || ||||| |||| ||||||||||| |||||||||| || || |||||||| ||||| |      
T  31204445 gcacaagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaat-aaattgaatgcacacaatttaaaa 31204347  T
Q  705 aaatatttcttcttttggttttcttaacatgtgccct 741  Q
     ||||||  ||||||||| ||||||||||||||||||    
T  31204346 gaatattatttcttttgggtttcttaacatgtgccct 31204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 34015256 - 34015082
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    ||||||| |||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||| | || |||||  ||||||| ||  ||||||| | |     
T  34015256 ataaccataagtgattcatctcgcataagatgtgcaaaagagaatcacttaaaaacgatacaata-tcggttcatcggtgccacaataacagacaccgtg 34015158  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
      |||  ||| |||||||||||||||||||| |||||  ||||||  || || |||||||||||| ||||||||||    
T  34015157 atttctaaaccaaaacaaagaagattacatgtaaatactcatacagtacctacggtgttgccaccagtcatggtaa 34015082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 620 - 743
Target Start/End: Complemental strand, 12800066 - 12799944
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttt 719  Q
    |||||||||| ||  |||||||| ||||||||| || |||| ||| ||| |||||||||| | ||| ||||||||||||||||| || | ||||||||||    
T  12800066 tcaaatataggaaagatttattggaatgtgtgctttgtattcaatatttaactttttaatca-tttaaatgcacaaaattttagaaattgtttcttcttt 12799968  T
Q  720 tggttttcttaacatgtgccctaa 743  Q
    |   ||||||||||||||||||||    
T  12799967 taagtttcttaacatgtgccctaa 12799944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 581 - 743
Target Start/End: Original strand, 17340300 - 17340459
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    |||||||||| || ||||||||| |||||| ||  ||  | ||||||  ||||| ||||||| ||||||||||||| ||||||||||| ||||||||||     
T  17340300 gaaatgctaatttatgcccttaaggcacaagtt--tgattaaaatatgaaaatagtttattggaatgtgtgcattacatttaatctttaactttttaat- 17340396  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    || || | |||| ||||||||||  |||  || ||||||| | ||||||||||||||||||||    
T  17340397 aaattgattgcataaaattttagagaatgctttttcttttagatttcttaacatgtgccctaa 17340459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 624 - 735
Target Start/End: Complemental strand, 48622361 - 48622251
Alignment:
Q  624 atatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggt 723  Q
    ||||||||| || ||| |||||||||||||||  ||| ||| ||| |||||||||| | ||| |||||||||||||||||  ||||||||||||||| |     
T  48622361 atatagaaaaaacttaatgaaatgtgtgcattgcattcaatatttaactttttaatca-tttaaatgcacaaaattttagagaatatttcttcttttagg 48622263  T
Q  724 tttcttaacatg 735  Q
    ||||||||||||    
T  48622262 tttcttaacatg 48622251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 605 - 720
Target Start/End: Original strand, 37056181 - 37056296
Alignment:
Q  605 gcacaaattaatgcatcaaatatag-aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttag 703  Q
    |||||| |||||| ||||||||||  ||||||||||||| || | |||||||| ||||||||||| ||||||||||||| || ||| ||||||| |||||    
T  37056181 gcacaagttaatgaatcaaatataataaataatttattggaaagggtgcattaaatttaatctttaactttttaatgaa-ttgaatacacaaaactttag 37056279  T
Q  704 gaaatatttcttctttt 720  Q
      |||| ||||||||||    
T  37056280 agaataattcttctttt 37056296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 580 - 663
Target Start/End: Original strand, 966672 - 966755
Alignment:
Q  580 ggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaa 663  Q
    ||||||||||||||| | ||| ||  ||||| |||||| |||||||||||||||| ||||||||||||||| ||||| ||||||    
T  966672 ggaaatgctaacttgcgtcctcaagacacaagttaatgaatcaaatatagaaatagtttattgaaatgtgtacattacatttaa 966755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 619 - 702
Target Start/End: Complemental strand, 16067894 - 16067812
Alignment:
Q  619 atcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaatttta 702  Q
    ||||||||||| | || |||||||||||||||| |||| ||||||||||| ||||||||||||| || ||| ||||||||||||    
T  16067894 atcaaatatagtactagtttattgaaatgtgtgtattacatttaatctttaactttttaatgaa-ttgaatacacaaaatttta 16067812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 518
Target Start/End: Complemental strand, 38516172 - 38516098
Alignment:
Q  444 aaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtga 518  Q
    ||||||||  ||||| |||||||||||||||||||||||| |||||||||||||||| ||||  |||||| ||||    
T  38516172 aaaacaaaattaattaaatcacatcaatcaacatcatttaattttattctcttttaaatttttcatttgaagtga 38516098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 2554248 - 2554192
Alignment:
Q  578 tgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaata 634  Q
    |||||||||||||||||||||||||| |||||| |||||| |||||| |||||||||    
T  2554248 tgggaaatgctaacttgtgcccttaaggcacaagttaatgaatcaaaaatagaaata 2554192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 34121087 - 34121147
Alignment:
Q  434 tgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctc 494  Q
    ||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||| ||||    
T  34121087 tgaaaaagttaaaacaaaaataatataatcacatcaatcaacatcatttagttttactctc 34121147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 600 - 713
Target Start/End: Original strand, 24453154 - 24453266
Alignment:
Q  600 ttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaatt 699  Q
    ||||| ||||| |||||  ||||||||||  ||| | |||||||||| ||||||||| ||||||||||| |||||| |||| |||| |||||| ||||||    
T  24453154 ttaaaacacaagttaataaatcaaatatatgaatgagttattgaaatatgtgcattaaatttaatctttaacttttcaatg-atttgaatgcataaaatt 24453252  T
Q  700 ttaggaaatatttc 713  Q
    | ||  ||||||||    
T  24453253 taagagaatatttc 24453266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 619 - 739
Target Start/End: Original strand, 31861072 - 31861190
Alignment:
Q  619 atcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttc-t 717  Q
    ||||||||| |||||||||||  |||| |||||||||| ||||||||||| |||||| |||| |||| |||||||||| ||| |   ||||||| ||| |    
T  31861072 atcaaatat-gaaataatttaa-gaaacgtgtgcattaaatttaatctttaacttttcaatg-atttaaatgcacaaactttaaaagaatattttttctt 31861168  T
Q  718 tttggttttcttaacatgtgcc 739  Q
    ||||  ||||||||||||||||    
T  31861169 tttgagtttcttaacatgtgcc 31861190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 672 - 736
Target Start/End: Complemental strand, 5807422 - 5807359
Alignment:
Q  672 tttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    |||||||||||||  ||||||||||||||||  |||||||| ||||||||  |||||||||||||    
T  5807422 tttttaatgaatta-aatgcacaaaattttaaaaaatattttttcttttgaatttcttaacatgt 5807359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 8950304 - 8950351
Alignment:
Q  212 agaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaa 259  Q
    |||||||||| |||| ||| ||||||||||||||| ||||||||||||    
T  8950304 agaagtaatttatctcgcaaaaggtgtgcaaaagataatcacttaaaa 8950351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 10359090 - 10359056
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||| ||||||||||||||||||||||||||    
T  10359090 attcatctagcacaaggtgtgcaaaagagaatcac 10359056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 630 - 720
Target Start/End: Original strand, 33176500 - 33176589
Alignment:
Q  630 aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttctttt 720  Q
    ||||| ||||||  ||| ||||||||| ||||||| ||| |||||| ||| ||||| ||| ||||||||||||  |||||||| |||||||    
T  33176500 aaatagtttattagaatatgtgcattacatttaatatttaacttttaaataaattt-aatacacaaaattttaaaaaatatttattctttt 33176589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 504
Target Start/End: Complemental strand, 29061657 - 29061608
Alignment:
Q  455 aatttaatcacatcaatcaacatcatttagttttattctcttttaatttt 504  Q
    |||||||||| ||||||  |||||||||| |||||||||||||| |||||    
T  29061657 aatttaatcatatcaattgacatcatttacttttattctctttttatttt 29061608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-68; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-68
Query Start/End: Original strand, 186 - 366
Target Start/End: Original strand, 16238690 - 16238872
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16238690 acaagccaaaatgaatttt-ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgaaacaaaagtcagttcactggtg 16238788  T
Q  286 ccataaatacagacatcataccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccac 366  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  16238789 ccataaatacagacatcaaactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccac 16238872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-49
Query Start/End: Original strand, 579 - 743
Target Start/End: Complemental strand, 44966184 - 44966021
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| |||||||||||||||| |||||| ||||||  |||||||||||| |||||||||| ||||||||||||  ||||||||||| |||||||||    
T  44966184 gggaaatgttaacttgtgcccttaaggcacaagttaatgattcaaatatagaattaatttattggaatgtgtgcattgcatttaatctttaactttttaa 44966085  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||| || |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  44966084 tgaa-ttgaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtgccctaa 44966021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-43
Query Start/End: Original strand, 186 - 320
Target Start/End: Original strand, 22670008 - 22670141
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    ||||||||||||||||||| |||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  22670008 acaagccaaaatgaatttt-ataaccagaagtgagtaatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcaattcgctggtg 22670106  T
Q  286 ccataaatacagacatcataccttcacaactaaaa 320  Q
    |||||||||||||||||| || |||||||| ||||    
T  22670107 ccataaatacagacatcaaactttcacaaccaaaa 22670141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-35
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 25599216 - 25599391
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  |||||||| |||||||||| ||||||| ||| ||| ||||| |     
T  25599216 ataaccataagtgattcatcttgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtgccacaaacacaaacatcgtg 25599315  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
      |||| ||| ||| ||||||||||||||| ||||||  ||||||||||||| |||||||||||  ||||||||||    
T  25599316 atttcaaaaccaaagcaaagaagattacataaaaatacccatacaagacatagggtgttgccactagtcatggtaa 25599391  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 427 - 541
Target Start/End: Original strand, 6407924 - 6408038
Alignment:
Q  427 atcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgccc 526  Q
    ||||||| ||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |     
T  6407924 atcaaatggaaaaattttaaacaaaaataattaaatcacatcaatcaacatcatttagttttattctcttttaatttttgcatttgatgtaagtgtgtct 6408023  T
Q  527 aaatatttattattt 541  Q
    |||||||||| ||||    
T  6408024 aaatatttatcattt 6408038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-30
Query Start/End: Original strand, 583 - 740
Target Start/End: Complemental strand, 40711328 - 40711173
Alignment:
Q  583 aatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaa 682  Q
    |||||||||||||||  |||| |||||| || |||  ||||||||| |||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  40711328 aatgctaacttgtgcg-ttaaggcacaagttcatgattcaaatataaaaattatttattgaaatgtgtgtattgtatttaatttttaactttttaatgaa 40711230  T
Q  683 ttttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccc 740  Q
     || ||||||||||||||||   ||||||||||||||||  |||||||||||||||||    
T  40711229 -ttaaatgcacaaaattttatacaatatttcttcttttgtgtttcttaacatgtgccc 40711173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 579 - 743
Target Start/End: Complemental strand, 34929356 - 34929193
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| |||||||||||||||| |||||| || ||    ||||| |||||||||| ||||| |||| |||||||| ||||||||||| |  ||||||    
T  34929356 gggaaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaataatgtattggaatgcgtgcattaaatttaatctttaatgttttaa 34929257  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||||  |||||||||| ||| |||||||||| ||| || ||| ||||||||||||||||||||    
T  34929256 tgaattg-aatgcacaaagtttaaggaaatattcctttttctggatttcttaacatgtgccctaa 34929193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 45066112 - 45066013
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    |||||||||| |||||||| ||||| |||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45066112 acaagccaaattgaatttt-ataacgagaagtgattcatctcgcataagatgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcattggtg 45066014  T

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Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-27
Query Start/End: Original strand, 433 - 516
Target Start/End: Original strand, 39324792 - 39324875
Alignment:
Q  433 ttgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgt 516  Q
    |||||||||||||||||||  |||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39324792 ttgaaaaatttaaaacaaaaataattagatcacatcaatcaatatcatttagttttattctcttttaatttttgtatttgatgt 39324875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 36964486 - 36964659
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    ||||||| |||  |||| ||| ||| |||||||||||||||||||||||| |||   ||||||| |||||||||| |||||| |||| | ||||| | |     
T  36964486 ataaccaaaagagattcgtctcgcagaaggtgtgcaaaagagaatcacttcaaacatatacaaatgtcagttcaccggtgccgtaaacatagacaccgtg 36964585  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacataggtgttgccacccgtcatggtaa 378  Q
      |||| ||| ||||||||||||||||||| ||||||  ||||||||||||| ||||||||| | ||||||||||    
T  36964586 ttttcaaaaccaaaacaaagaagattacataaaaatacccatacaagacata-gtgttgccatcagtcatggtaa 36964659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-20
Query Start/End: Original strand, 582 - 737
Target Start/End: Complemental strand, 31663555 - 31663402
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||||||| | |||||| |||| |||||  | |||||||| ||||| ||||||| ||||||||||||||||||||| ||| |||||| |||||    
T  31663555 aaatgttaacttgtgtcattaaagtacaagttaattaaacaaatatataaatagtttattggaatgtgtgcattatatttaat-tttaacttttgaatga 31663457  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    | || ||||||||| ||||||   ||||||| |||||||   ||||||||||||||    
T  31663456 a-ttgaatgcacaatattttaaagaatattttttcttttaaatttcttaacatgtg 31663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 581 - 722
Target Start/End: Original strand, 1278109 - 1278247
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    |||||| ||| ||||||||||||  |||||||||||    |||||||| ||||||||||||| || ||| |||| | ||||||||||| ||||||||||     
T  1278109 gaaatgttaatttgtgcccttaagacacaaattaatatggcaaatatataaataatttattggaacgtgcgcat-acatttaatctttaactttttaata 1278207  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttgg 722  Q
    ||||||  ||||||||||||||  ||||||||||| ||||||    
T  1278208 aatttt--tgcacaaaattttataaaatatttctttttttgg 1278247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 633 - 739
Target Start/End: Complemental strand, 44022269 - 44022164
Alignment:
Q  633 taatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaac 732  Q
    ||||||||||||||| |||| ||| ||||||| ||| |||||||||| ||||  |||||||||||||||||| |||||| |||||||| | ||||||| |    
T  44022269 taatttattgaaatgcgtgccttacatttaatttttaactttttaattaattg-aatgcacaaaattttagggaatattacttcttttaggtttcttatc 44022171  T
Q  733 atgtgcc 739  Q
    |||||||    
T  44022170 atgtgcc 44022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 622 - 743
Target Start/End: Original strand, 25220763 - 25220883
Alignment:
Q  622 aaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttg 721  Q
    ||||||||||||||||||||||||| |||| |||   |||||||||| | |||||||| || || ||| || |||||||||| |||| ||||||||||||    
T  25220763 aaatatagaaataatttattgaaatttgtgtattgcttttaatctttaattttttaatcaa-ttaaattcataaaattttagaaaatgtttcttcttttg 25220861  T
Q  722 gttttcttaacatgtgccctaa 743  Q
      ||| ||||||||||||||||    
T  25220862 aattttttaacatgtgccctaa 25220883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 582 - 703
Target Start/End: Complemental strand, 27269257 - 27269137
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    |||| |||||||  |||||||| ||| || |||||| |||||   || ||||||||||||||||||||||||||  |||||| |||| ||||||||||||    
T  27269257 aaatcctaacttacgcccttaacgcataagttaatgaatcaatggtataaataatttattgaaatgtgtgcatttcatttaacctttaactttttaatga 27269158  T
Q  682 attttaatgcacaaaattttag 703  Q
    | ||  ||||||||||||||||    
T  27269157 a-ttagatgcacaaaattttag 27269137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 959909 - 959851
Alignment:
Q  209 accagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaa 268  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  959909 accagaagtaattcatctcgcacaagatgtgcaaaagagaatcactt-aaaacgatacaa 959851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 588 - 743
Target Start/End: Complemental strand, 6461393 - 6461240
Alignment:
Q  588 taacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaatttta 687  Q
    ||||||||  ||||||  ||||| ||||||||| ||||||||||||  |||||| ||||  ||| || | ||||||||||| ||||||||||||| || |    
T  6461393 taacttgtatccttaagacacaagttaatgcattaaatatagaaattgtttatt-aaatacgtgtatcacatttaatctttaactttttaatgaa-ttga 6461296  T
Q  688 atgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||| | |||||||| |  ||||||||||||||||  ||| |||||||||| |||||    
T  6461295 atgtataaaattttggagaatatttcttcttttgagttttttaacatgtgtcctaa 6461240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 572
Target Start/End: Complemental strand, 4141404 - 4141295
Alignment:
Q  464 acatcaatcaacatcatttagttttattctcttttaa-tttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaa 562  Q
    ||||||||||||||||| | |||||||| || ||||| ||||| |||||||||||| ||| | ||||||||| | ||||| | ||||| ||||| ||||     
T  4141404 acatcaatcaacatcatcttgttttattttcatttaactttttttatttgatgtgaatgtactcaaatatttttcatttaggattgtgcccatacaagag 4141305  T
Q  563 tttctcgtta 572  Q
    ||||||||||    
T  4141304 tttctcgtta 4141295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 22843504 - 22843578
Alignment:
Q  85 ttattgttgaccgccatcttttttccaccaaccttcatgatttccgcaaagccacgttttgatattggttaattat 160  Q
    |||||||| |||||||||||||||| ||||||| |||||| ||||||||| | | |||||| ||||||||||||||    
T  22843504 ttattgttcaccgccatcttttttcaaccaacc-tcatgaattccgcaaatctatgttttgctattggttaattat 22843578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 622 - 737
Target Start/End: Original strand, 33025195 - 33025309
Alignment:
Q  622 aaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttg 721  Q
    ||||||||||||||| |||| | ||| || ||||| ||||||||||| |  |||| |||||||  |||||||||| ||| ||| |||||||| | |||||    
T  33025195 aaatatagaaataatatattaagatgcgtacattaaatttaatctttaatgttttgatgaattg-aatgcacaaagtttaagggaatatttcattttttg 33025293  T
Q  722 gttttcttaacatgtg 737  Q
    | ||||||||||||||    
T  33025294 gatttcttaacatgtg 33025309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 612 - 720
Target Start/End: Complemental strand, 8996659 - 8996551
Alignment:
Q  612 ttaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaa-tat 710  Q
    |||||| | |||||||||||||| || ||| |||||||||||||  ||||||| |||  |||||||||| | || ||||||||||||||||  ||| |||    
T  8996659 ttaatgaaacaaatatagaaatagttcattaaaatgtgtgcattccatttaatgtttagctttttaatg-agttgaatgcacaaaattttataaaattat 8996561  T
Q  711 ttcttctttt 720  Q
    ||||||||||    
T  8996560 ttcttctttt 8996551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 581 - 661
Target Start/End: Original strand, 34242357 - 34242437
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatattt 661  Q
    |||||||||| ||||| | |||||| | || |||||| |||||||||| ||||||||||||| ||||| ||||||| ||||    
T  34242357 gaaatgctaaattgtgtcattaaagtataagttaatgaatcaaatatataaataatttattggaatgtatgcattacattt 34242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 687 - 739
Target Start/End: Complemental strand, 41542812 - 41542760
Alignment:
Q  687 aatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||||||||||    
T  41542812 aatgcacaaaattttagagaatatttcttcttttgagtttcttaacatgtgcc 41542760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 965 - 1044
Target Start/End: Original strand, 4091455 - 4091534
Alignment:
Q  965 acgttgaaaaaatcgaacgtgagttaacttatagtgaacatttttaaaggaataaacaattttaaaagtgagaagagcaa 1044  Q
    ||||||||||| ||||   |||||||||| | |  |||||||||||| ||||| |||||||||||||| |||||||||||    
T  4091455 acgttgaaaaagtcgagtatgagttaactcacatcgaacatttttaagggaatgaacaattttaaaagggagaagagcaa 4091534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 26311185 - 26311135
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaa 269  Q
    |||||||| |||||||||||||||||||||||||| ||||||  |||||||    
T  26311185 attcatctcgcacaaggtgtgcaaaagagaatcacctaaaaagaatacaaa 26311135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 630 - 736
Target Start/End: Complemental strand, 31742807 - 31742702
Alignment:
Q  630 aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttctt 729  Q
    ||||| ||||||| ||| | || |||||||||||| ||| |||||| |||||| || |||| ||||||||| |  |||||||| ||||||||  ||||||    
T  31742807 aaatagtttattggaatatatgtattatatttaatgtttaacttttgaatgaa-ttgaatgtacaaaatttcaaaaaatattttttcttttgaatttctt 31742709  T
Q  730 aacatgt 736  Q
    |||||||    
T  31742708 aacatgt 31742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 579 - 664
Target Start/End: Complemental strand, 12972903 - 12972818
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaat 664  Q
    |||||| |||||||||||||||||| |||||| ||||||  |||||||||| ||   ||||||| |||||||| |||  |||||||    
T  12972903 gggaaaagctaacttgtgcccttaaggcacaagttaatgattcaaatatagtaactttttattggaatgtgtgtattgaatttaat 12972818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 778 - 835
Target Start/End: Original strand, 22843571 - 22843628
Alignment:
Q  778 ttaattatttgctcgcgagcatttcgtaataacatacgtcgttggatatagcagtact 835  Q
    |||||||||||||||||||| |||||| |||||||| |||| |  |||||||||||||    
T  22843571 ttaattatttgctcgcgagcgtttcgtgataacatatgtcgctaaatatagcagtact 22843628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 568
Target Start/End: Original strand, 31127316 - 31127449
Alignment:
Q  436 aaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattt-ttgtatttgatgtgagtgtgcccaaatattt 534  Q
    ||||| ||||||||||  ||||||| |||||||||| || |||||| | ||| ||||||||||||||| ||  |||| || || ||||| |||||| |||    
T  31127316 aaaaaattaaaacaaaattaatttagtcacatcaattaatatcattaaatttcattctcttttaatttcttccattttatatgcgtgtgtccaaatcttt 31127415  T
Q  535 attatttatgtttgtgtccatagaagaatttctc 568  Q
     | ||||  | ||||| |||||||||| ||||||    
T  31127416 ttgatttgggcttgtgaccatagaagattttctc 31127449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 10042745 - 10042685
Alignment:
Q  445 aaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||  |||||||||||||| |||  | |||||||| |||||||||||||||||||||    
T  10042745 aaacaaaattaatttaatcacataaattgaaatcatttaattttattctcttttaattttt 10042685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 30856621 - 30856681
Alignment:
Q  445 aaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||  ||||||| |||||||||| || |||||||| |||| ||||||||||||||||    
T  30856621 aaacaaaaataatttagtcacatcaattaatatcatttaatttttttctcttttaattttt 30856681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 17696108 - 17696043
Alignment:
Q  672 tttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    |||||||||||||  |||||||||| ||| ||| |||||||||| |||||| ||||||||||||||||    
T  17696108 tttttaatgaattg-aatgcacaaagtttaagggaatatttctt-ttttggatttcttaacatgtgcc 17696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 687 - 741
Target Start/End: Complemental strand, 2080582 - 2080528
Alignment:
Q  687 aatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccct 741  Q
    |||||||||||||| ||  ||||||| | ||||||| ||||||||||||||||||    
T  2080582 aatgcacaaaatttaagagaatatttttgcttttgggtttcttaacatgtgccct 2080528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 30019737 - 30019691
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30019737 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 30019691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 30040958 - 30041004
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30040958 aaaaattaaaacaaaaataatttgatcacatcaatcaacatcattta 30041004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 30046028 - 30046074
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30046028 aaaaattaaaacaaaaataatttgatcacatcaatcaacatcattta 30046074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 30078264 - 30078218
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30078264 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 30078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 30110436 - 30110482
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30110436 aaaaattaaaacaaaaataatttgatcacatcaatcaacatcattta 30110482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 30137072 - 30137118
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30137072 aaaaattaaaacaaaaataatttgatcacatcaatcaacatcattta 30137118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 30235096 - 30235142
Alignment:
Q  437 aaaatttaaaacaaatgtaatttaatcacatcaatcaacatcattta 483  Q
    |||| ||||||||||  |||||| |||||||||||||||||||||||    
T  30235096 aaaaattaaaacaaaaataatttgatcacatcaatcaacatcattta 30235142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 35499571 - 35499605
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    ||||||||||||||||||||||||||| |||||||    
T  35499571 attcatcttgcacaaggtgtgcaaaagtgaatcac 35499605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 568
Target Start/End: Complemental strand, 6407939 - 6407870
Alignment:
Q  499 aatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||  ||||||||||| |||  | |||||||||| ||||||  |||||||||||||||| ||||||    
T  6407939 aatttttccatttgatgtgaatgtttctaaatatttatcatttatagttgtgtccatagaagagtttctc 6407870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 42352218 - 42352165
Alignment:
Q  508 atttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    ||||||||||||||||||||||||||| ||| ||| | ||||| ||||| ||||    
T  42352218 atttgatgtgagtgtgcccaaatattttttacttaagattgtgcccataaaaga 42352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 109; Significance: 6e-54; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 109; E-Value: 6e-54
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 2800 - 2967
Alignment:
Q  214 aagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcataccttcaca 313  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||    
T  2800 aagtgattcatctcgcacaatgtgtgcaaaagagaatcacttgaaaacgatacaaaagtcagttcactggtgccataaatacagacatcgtgctttcaca 2899  T
Q  314 actaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    || |||||||||||||||| |||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  2900 accaaaacaaagaagattatatgaaaatactcatacaagacatagggtgttgccaccagtcatggtaa 2967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 85; Significance: 1e-39; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 85; E-Value: 1e-39
Query Start/End: Original strand, 186 - 378
Target Start/End: Original strand, 38479 - 38673
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    |||||||| |||||||||| |||| ||||| | ||| |||  | |||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  38479 acaagccacaatgaatttt-ataatcagaaatgatttatcccgtacaaggtgtgcaaaagagaatcacttaaaaacgatacaattgtcagttcactggtg 38577  T
Q  286 ccataaatacagacatcataccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    |||| |||||||||||| |   |||| ||| |||||||| |||||||||| ||||||  ||||||||||||| |||||| ||||| ||||||||||    
T  38578 ccatgaatacagacatcgtgatttcaaaaccaaaacaaataagattacataaaaatactcatacaagacatagggtgttaccacctgtcatggtaa 38673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-39; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-39
Query Start/End: Original strand, 579 - 743
Target Start/End: Complemental strand, 10881990 - 10881827
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||  ||| ||||||||||||   |||| ||||||||||||||||||||||  ||||||  ||||||||||||| ||||||||||| | |||||||    
T  10881990 gggaaattataatttgtgcccttaatatacaagttaatgcatcaaatatagaaattgtttattagaatgtgtgcattacatttaatctttaattttttaa 10881891  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||| || |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10881890 tgaa-ttgaatgcataaaattttagggaatatttcttcttttggttttcttgacatgtgccctaa 10881827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-38
Query Start/End: Original strand, 427 - 568
Target Start/End: Complemental strand, 8245498 - 8245357
Alignment:
Q  427 atcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgccc 526  Q
    ||||||| ||||||||| |||||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||     
T  8245498 atcaaatggaaaaattttaaacaaaaataattaaatcacatcaatcaacatcatttaattttattctcttttaatttttgcatttgatgtgagtgtgcct 8245399  T
Q  527 aaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||||| |||| |  ||||||  |||||||| ||||||    
T  8245398 aaatatttatcatttgtaattgtgtttatagaagagtttctc 8245357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-35
Query Start/End: Original strand, 578 - 731
Target Start/End: Original strand, 39275817 - 39275969
Alignment:
Q  578 tgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttttta 677  Q
    ||||||||| |||||||||| |||||||||||| ||||||  ||||| ||| |||||| ||||||||||||||||||| |||||||||||| |||||| |    
T  39275817 tgggaaatgttaacttgtgcgcttaaagcacaagttaatgattcaaacatataaataaattattgaaatgtgtgcattttatttaatctttaacttttaa 39275916  T
Q  678 atgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaa 731  Q
    |||  ||| |||||| ||||||||||  ||||||||||||||||| ||||||||    
T  39275917 atg-ctttgaatgcataaaattttagagaatatttcttcttttgggtttcttaa 39275969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-34
Query Start/End: Original strand, 612 - 743
Target Start/End: Complemental strand, 51295845 - 51295716
Alignment:
Q  612 ttaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatt 711  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||| || ||||    
T  51295845 ttaatgaatcaaatgtagaaataatttattggaatgtgtgcattacatttaatctttaactttttaatgaa-ttgaatgcacaaaattttagaaattatt 51295747  T
Q  712 tcttcttttggttttcttaacatgtgccctaa 743  Q
    | || |||||| ||||||||||||||||||||    
T  51295746 tatt-ttttgggtttcttaacatgtgccctaa 51295716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 454 - 568
Target Start/End: Original strand, 23391935 - 23392049
Alignment:
Q  454 taatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtcc 553  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| ||||||| |||||||     
T  23391935 taattgaatcacatcaatcaacatcatttagttttattctcttttagtttttgcatttgatgtgagtgtgtctaaatagttatcatttatgattgtgtct 23392034  T
Q  554 atagaagaatttctc 568  Q
    |||||||| ||||||    
T  23392035 atagaagagtttctc 23392049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-32
Query Start/End: Original strand, 377 - 541
Target Start/End: Original strand, 42106967 - 42107134
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    |||||||| ||||||  ||| |||||||||||| ||||||| | ||| || ||||||| |||||||||||||||||  ||||| |||||||||||| |||    
T  42106967 aaactcttctatggactcaaccacaaatgataaatatttggacacactcacatcaaatggaaaaatttaaaacaaaaataattaaatcacatcaattaac 42107066  T
Q  476 atcatt--tagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattattt 541  Q
    ||||||  ||||||||||||||||||||||||| ||||||| ||||||||   |||||||||| ||||    
T  42107067 atcatttatagttttattctcttttaatttttgcatttgatatgagtgtgtgtaaatatttatcattt 42107134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-26
Query Start/End: Original strand, 581 - 743
Target Start/End: Complemental strand, 18023942 - 18023781
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    ||||||||||||| ||||| | |  || |||||||||  ||||||||||||||||||||||||||| |||||| |  | ||||||||| |||||||||||    
T  18023942 gaaatgctaacttatgcccctgagacataaattaatgattcaaatatagaaataatttattgaaatatgtgcactgcaattaatctttaactttttaatg 18023843  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    || || |||| | |||||||| | ||||||||||||| |||  ||||||||||||||| ||||    
T  18023842 aa-ttgaatgaataaaatttttgaaaatatttcttctcttgaatttcttaacatgtgctctaa 18023781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 578 - 743
Target Start/End: Complemental strand, 24466697 - 24466531
Alignment:
Q  578 tgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttatt-gaaatgtgtgcattatatttaatctttgac-tttt 675  Q
    ||||||||||||||||||| ||||||  ||||| |||||  |||||||| ||||||| ||||||  ||| |||||||||| ||||||||||| || ||||    
T  24466697 tgggaaatgctaacttgtgaccttaagacacaagttaataaatcaaataaagaaatagtttattaaaaacgtgtgcattacatttaatctttaacttttt 24466598  T
Q  676 taatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||| || || |||| ||||||||||||  |||||||||| |||||  ||| ||||||||||||||||    
T  24466597 taattaa-ttgaatgtacaaaattttagagaatatttctttttttgaattttttaacatgtgccctaa 24466531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 620 - 743
Target Start/End: Complemental strand, 29587243 - 29587121
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttt 719  Q
    |||||||||||||||| |||||| |||||||||||| |||||| ||||| |||||| |||| | || |||||||| ||||||||  || |||| ||||||    
T  29587243 tcaaatatagaaataaattattggaatgtgtgcattttatttagtctttaacttttaaatgca-ttgaatgcacataattttagagaacatttattcttt 29587145  T
Q  720 tggttttcttaacatgtgccctaa 743  Q
    ||| ||||||||||||||||||||    
T  29587144 tgggtttcttaacatgtgccctaa 29587121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 637 - 743
Target Start/End: Original strand, 43949118 - 43949223
Alignment:
Q  637 ttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    |||||| ||| ||||||||| ||||||||||  ||||| |||||||||  |||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  43949118 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattg-aatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgt 43949216  T
Q  737 gccctaa 743  Q
    |||||||    
T  43949217 gccctaa 43949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-23
Query Start/End: Original strand, 582 - 743
Target Start/End: Complemental strand, 34711071 - 34710911
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| |||||||||||||||   ||||| |||||| | ||||||||||||||  | ||||||||||||| |||| |||||||||||  ||||||||||     
T  34711071 aaatgttaacttgtgcccttatgacacaagttaatgaaacaaatatagaaatagctcattgaaatgtgtgtattacatttaatctttagctttttaatg- 34710973  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    | || |||||||| |||||||  ||||| |||||||||| |  |||||||||||| ||||||    
T  34710972 agttgaatgcacacaattttataaaatacttcttcttttaggattcttaacatgtaccctaa 34710911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 424 - 523
Target Start/End: Complemental strand, 2138438 - 2138339
Alignment:
Q  424 catatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtg 523  Q
    ||||| |||| ||||| ||||||| |||  |||||||||||||| ||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  2138438 catattaaatggaaaattttaaaataaaaataatttaatcacatgaatcaacatcatttacttttattctttttgaatttttatatttgatgtgagtgtg 2138339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 577 - 735
Target Start/End: Complemental strand, 15279166 - 15279008
Alignment:
Q  577 ttgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttttt 676  Q
    |||||||||| ||| || |||||||||  ||||| ||||||  ||||||||||||||||||||||  ||||||||||||  ||||||| ||| |||||||    
T  15279166 ttgggaaatgttaatttctgcccttaagacacaagttaatgattcaaatatagaaataatttattagaatgtgtgcattgcatttaatatttaacttttt 15279067  T
Q  677 aatgaattttaatgcacaaaatt-ttaggaaatatttcttcttttggttttcttaacatg 735  Q
    ||| || || ||||||||||||| | |  ||||||||||||| |||  ||||||||||||    
T  15279066 aat-aaattgaatgcacaaaattataaaaaaatatttcttctcttgagtttcttaacatg 15279008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 6e-20
Query Start/End: Original strand, 640 - 780
Target Start/End: Complemental strand, 44595799 - 44595668
Alignment:
Q  640 ttgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    ||||||||||||||||| |||||| |||| ||||||||||||| || ||||||||||||||||   ||||||||||||||| | |||||||||||         
T  44595799 ttgaaatgtgtgcattacatttaaactttaactttttaatgaa-ttgaatgcacaaaattttaaagaatatttcttcttttagatttcttaacat----- 44595706  T
Q  740 ctaacaatatgccctaagagcacaagttaacactaccctta 780  Q
       ||| |||| || ||| ||||||||||||||||||||||    
T  44595705 ---acagtatgtcccaagggcacaagttaacactaccctta 44595668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 620 - 740
Target Start/End: Complemental strand, 51050170 - 51050051
Alignment:
Q  620 tcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttt 719  Q
    ||||||||| ||||||||||||| |||||||| | || |||||||| || | |||||||| ||||  ||||||||| |||||||  |||||||||| |||    
T  51050170 tcaaatatataaataatttattggaatgtgtgtaatacatttaatcgttaattttttaatcaatta-aatgcacaatattttagagaatatttctttttt 51050072  T
Q  720 tggttttcttaacatgtgccc 740  Q
    | | |||||||||||||||||    
T  51050071 taggtttcttaacatgtgccc 51050051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-17
Query Start/End: Original strand, 581 - 743
Target Start/End: Complemental strand, 42549347 - 42549186
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    |||||| ||| ||||||| |||| | |||| ||||||  ||||||||| |||||| | |||| |||||||  ||| |||||| ||||| |||||| ||||    
T  42549347 gaaatgttaagttgtgcctttaaggtacaagttaatgattcaaatataaaaataaataattggaatgtgtatattttatttagtctttaacttttaaatg 42549248  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
     |||  |||| | ||||||||||  ||||||||||||||| | ||||||||||| ||||||||    
T  42549247 cattg-aatgtataaaattttagagaatatttcttcttttaggtttcttaacatatgccctaa 42549186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 644 - 743
Target Start/End: Complemental strand, 18436409 - 18436311
Alignment:
Q  644 aatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||||| ||||| ||||||||||| |  ||||||||||||  ||||| |||| ||| | |||||||||||| |||||| ||||||||||||||||||||    
T  18436409 aatgtgtacattaaatttaatctttaatgttttaatgaattg-aatgctcaaagtttaaagaaatatttctttttttggatttcttaacatgtgccctaa 18436311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 436 - 522
Target Start/End: Original strand, 1035411 - 1035498
Alignment:
Q  436 aaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctc-ttttaatttttgtatttgatgtgagtgt 522  Q
    ||||| ||||||||||  |||||  ||||||| |||| | ||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  1035411 aaaaaattaaaacaaaaataattagatcacattaatctatatcatttagttttattctctttttaatttttgcatttgatatgagtgt 1035498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 662 - 736
Target Start/End: Original strand, 36313612 - 36313685
Alignment:
Q  662 aatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    ||||||| |||||||||||||||  ||| ||||||||||||  |||||||||||||||||  |||||||||||||    
T  36313612 aatctttaactttttaatgaattg-aattcacaaaattttaaaaaatatttcttcttttgactttcttaacatgt 36313685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 500 - 561
Target Start/End: Complemental strand, 23391932 - 23391871
Alignment:
Q  500 atttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    |||||| |||||||||||||||| ||||||||||||| |||| || ||||||||||| ||||    
T  23391932 atttttttatttgatgtgagtgtccccaaatatttatcatttgtggttgtgtccatataaga 23391871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 624 - 741
Target Start/End: Original strand, 31262401 - 31262517
Alignment:
Q  624 atatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggt 723  Q
    |||| ||| ||||| |||| ||||||| ||||| ||||||| |||  ||||||||||| ||  |||| ||||||||| |  ||||||||||| |||| |     
T  31262401 atatcgaattaattcattgtaatgtgtacattacatttaatatttagctttttaatgagttg-aatgtacaaaatttgataaaatatttctttttttagg 31262499  T
Q  724 tttcttaacatgtgccct 741  Q
    ||||||||||||||||||    
T  31262500 tttcttaacatgtgccct 31262517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 568
Target Start/End: Complemental strand, 42107033 - 42106964
Alignment:
Q  499 aatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||  |||||||||||||||| |||||||||||| |||| || ||| |||||||||||| ||||||    
T  42107033 aatttttccatttgatgtgagtgtgtccaaatatttatcatttgtggttgagtccatagaagagtttctc 42106964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 500
Target Start/End: Complemental strand, 38645248 - 38645193
Alignment:
Q  445 aaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaa 500  Q
    |||||||  ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  38645248 aaacaaaaataatttaatcacatcaattgacatcatttaattttattctcttttaa 38645193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 568
Target Start/End: Original strand, 8245483 - 8245552
Alignment:
Q  499 aatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||  |||||||||||||||  | |||||||||| ||||||  |||||||||||||||| ||||||    
T  8245483 aatttttccatttgatgtgagtgtttctaaatatttatcatttatagttgtgtccatagaagagtttctc 8245552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 622 - 743
Target Start/End: Original strand, 15401690 - 15401810
Alignment:
Q  622 aaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttg 721  Q
    ||||||| ||||||| ||||| |||| || ||||| ||||||| ||| |  ||||||| ||||  |||||||||| ||| ||  |||| ||||| ||||     
T  15401690 aaatataaaaataatgtattggaatgcgtacattaaatttaatatttaatgttttaatcaattg-aatgcacaaagtttaagagaataattcttttttta 15401788  T
Q  722 gttttcttaacatgtgccctaa 743  Q
    | ||||||||||||||||||||    
T  15401789 gatttcttaacatgtgccctaa 15401810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1488 - 1571
Target Start/End: Original strand, 23809891 - 23809975
Alignment:
Q  1488 gacaaaatgataaagtcat-ataaaccgatacacataagtggaagcgtcacagttcgaactccgatcatgacatctgacctaaca 1571  Q
    |||||||||| |||||||| ||||||  | ||||||||||||| |  ||  |||||||||||||||||||||||| | |||||||    
T  23809891 gacaaaatgacaaagtcattataaactcacacacataagtggaggtatcggagttcgaactccgatcatgacatccggcctaaca 23809975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 687 - 734
Target Start/End: Complemental strand, 46220691 - 46220644
Alignment:
Q  687 aatgcacaaaattttaggaaatatttcttcttttggttttcttaacat 734  Q
    |||||||||||||| |||||||||||||| |||||  |||||||||||    
T  46220691 aatgcacaaaatttaaggaaatatttctttttttgaatttcttaacat 46220644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 27895533 - 27895499
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||| ||||||||||||||||||||||||||    
T  27895533 attcatctcgcacaaggtgtgcaaaagagaatcac 27895499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 48915791 - 48915749
Alignment:
Q  519 gtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    |||||||||||||||| | ||||| ||||||||||||||||||    
T  48915791 gtgtgcccaaatatttttcatttaggtttgtgtccatagaaga 48915749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 1035422 - 1035365
Alignment:
Q  495 ttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtc 552  Q
    ||||||||||| ||||| |||||||||| | ||||||||||| |||| || |||||||    
T  1035422 ttttaatttttttatttaatgtgagtgtactcaaatatttatcatttgtgattgtgtc 1035365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 16237048 - 16236992
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaa 243  Q
    ||||||||||||||| ||| |||| ||||||| |||||||| |||||| |||||||||    
T  16237048 acaagccaaaatgaa-tttcataatcagaagtgattcatctcgcacaaagtgtgcaaa 16236992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 28867155 - 28867223
Alignment:
Q  436 aaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||||||| |||  ||||| ||||| |||||||||||| || |||||||| ||| |||||||||||    
T  28867155 aaaaatttaaaataaaaataattaaatcatatcaatcaacat-atatagttttagtcttttttaattttt 28867223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 706 - 743
Target Start/End: Complemental strand, 39412494 - 39412457
Alignment:
Q  706 aatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  39412494 aatatttcttcttttgagtttcttaacatgtgccctaa 39412457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 583 - 644
Target Start/End: Complemental strand, 42728587 - 42728526
Alignment:
Q  583 aatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaa 644  Q
    ||||||||||||||||||| || ||||||||||||  ||||| ||  ||||| |||||||||    
T  42728587 aatgctaacttgtgcccttcaaacacaaattaatgagtcaaaaatgaaaatattttattgaa 42728526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-37; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-37
Query Start/End: Original strand, 579 - 739
Target Start/End: Original strand, 53287383 - 53287542
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| ||||||||||||||||  ||||| ||||||  |||||||||||||| |||||||| ||||||||||||  ||||||| | | |||||| ||    
T  53287383 gggaaatgttaacttgtgcccttaagccacaagttaatgattcaaatatagaaatcatttattggaatgtgtgcattgcatttaatttgtaacttttcaa 53287482  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    |||| || |||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  53287483 tgaa-ttgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgcc 53287542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-34
Query Start/End: Original strand, 580 - 743
Target Start/End: Complemental strand, 24657385 - 24657223
Alignment:
Q  580 ggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaat 679  Q
    ||||||| ||| ||||||||||||  || |||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  24657385 ggaaatgataatttgtgcccttaagacataaataaatgattcaaatatagaaattatttattggaatgtgtgcattatatttaatctttaactttttaat 24657286  T
Q  680 gaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
     || || ||| ||||||||||||| |||||||||||  ||||  |||||||||||||| |||||    
T  24657285 -aaattgaatacacaaaattttagaaaatatttctttctttgaatttcttaacatgtgtcctaa 24657223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 576 - 743
Target Start/End: Complemental strand, 41519660 - 41519492
Alignment:
Q  576 attgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttt 675  Q
    ||||||||||||||||||||||||| || |||||| ||||||  || |||||||||||||||||||||||  ||||||||  ||||||||||| | ||||    
T  41519660 attgggaaatgctaacttgtgccctcaaggcacaagttaatgattcgaatatagaaataatttattgaaaaatgtgcattgcatttaatctttaattttt 41519561  T
Q  676 taatgaattttaatgcacaaaattttaggaaatatttct--tcttttggttttcttaacatgtgccctaa 743  Q
    |||| || || |||||||||| |||||||||||||||||  ||||||   ||| ||||||||||||||||    
T  41519560 taatcaa-ttaaatgcacaaagttttaggaaatatttcttctcttttaagtttattaacatgtgccctaa 41519492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-33
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 38472779 - 38472900
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagaca-tcat 304  Q
    |||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| || |    
T  38472779 ataaccagaagtgattcatctcgcacaagatgtgcaaaaaagaatcacttaaaaacgatacaaaattcagttctctgatgccataaatacagacattcgt 38472878  T
Q  305 accttcacaactaaaacaaaga 326  Q
    || |||||||| ||||||||||    
T  38472879 actttcacaaccaaaacaaaga 38472900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-32
Query Start/End: Original strand, 376 - 568
Target Start/End: Complemental strand, 54449959 - 54449762
Alignment:
Q  376 taaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatg----taatttaatcacatcaa 470  Q
    ||||||||| |||||| |||| |  ||||||||| ||||||||| ||   | || |||| ||||||||||||||||||     |||||  ||||||||||    
T  54449959 taaactcttctatggacacaatcgtaaatgataaatatttgggcacattgacattaaatagaaaaatttaaaacaaattaaaataattagatcacatcaa 54449860  T
Q  471 tcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||| |||| | |||||||||| ||||||| ||||||| |||||||| ||||||    
T  54449859 tcaatatcatttagttttattctcttttaatttttgcatttaatgtgaatgtgtctaaatatttatcatttatggttgtgtctatagaagagtttctc 54449762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-30
Query Start/End: Original strand, 577 - 741
Target Start/End: Original strand, 28554130 - 28554293
Alignment:
Q  577 ttgggaaatgctaacttgtgcccttaaag-cacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttt 675  Q
    |||||||||| ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||    
T  28554130 ttgggaaatgttaacttgtgtccttaagggcacagattaatgattcaaatatagaaataatttattgaaatgtgtgtattgtatttaat-tttaactttt 28554228  T
Q  676 taatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccct 741  Q
    | || || || ||||||||||||||||  |||||||||||||||| |   ||||||||||||||||    
T  28554229 tgatcaa-ttaaatgcacaaaattttaaaaaatatttcttcttttagaagtcttaacatgtgccct 28554293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 13014080 - 13014254
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgccataaatacagacatcata 305  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||||||||| |||  |||||||| |||||||||| ||||||||||| ||||||| | |     
T  13014080 ataaccagaagtgattcgtctcgcaca-ggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtgccataaacacagacaccgtg 13014178  T
Q  306 ccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
      |||| ||| |||||||  |||||||||| ||||||  ||||||||||||| |||||||||||| |||| |||||    
T  13014179 atttcaaaaccaaaacaataaagattacataaaaatacccatacaagacatagggtgttgccaccagtcagggtaa 13014254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 574 - 738
Target Start/End: Original strand, 30732751 - 30732914
Alignment:
Q  574 ttattgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactt 673  Q
    |||||| ||||||||||||||| |||||||   |||| |||||   |||| |||| ||||||||| ||| ||||| |||||| |||||||| ||| ||||    
T  30732751 ttattgtgaaatgctaacttgtacccttaagatacaagttaataattcaagtataaaaataatttgttggaatgtatgcattgtatttaatatttaactt 30732850  T
Q  674 tttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgc 738  Q
    |||||||||||  |||  |||||||||||  |||||||||||||||||| |||||||||||||||    
T  30732851 tttaatgaattg-aatttacaaaattttaaaaaatatttcttcttttgggtttcttaacatgtgc 30732914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 582 - 738
Target Start/End: Complemental strand, 42791218 - 42791065
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| |||||| ||||||||| |||||| |||||||||| |||||| || |||||||| | ||||||||||||| ||||||| ||| | ||||||||||    
T  42791218 aaatgttaacttttgcccttaaggcacaagttaatgcatcgaatataaaagtaatttatgggaatgtgtgcattacatttaat-tttaagtttttaatga 42791120  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgc 738  Q
    | || ||||||||||| |||||  ||||||||||||||| | |||||||||||||||    
T  42791119 a-ttgaatgcacaaaa-tttagagaatatttcttctttttggtttcttaacatgtgc 42791065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-26
Query Start/End: Original strand, 427 - 568
Target Start/End: Original strand, 25750856 - 25750998
Alignment:
Q  427 atcaaattgaaaaatttaaaacaaatg-taatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcc 525  Q
    ||||||| |||||||||||||||||   ||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||| |||||     
T  25750856 atcaaatagaaaaatttaaaacaaaaaataattaaattacatcaatcaacatcatttaattttattttcttttaatttttgcatttggtgtgaatgtgct 25750955  T
Q  526 caaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
     |||||||||| |||| || ||||||| ||| |||| ||||||    
T  25750956 taaatatttatcatttgtgattgtgtctatacaagattttctc 25750998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-26
Query Start/End: Original strand, 571 - 736
Target Start/End: Original strand, 20378982 - 20379146
Alignment:
Q  571 taattattgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttga 670  Q
    |||||| ||| ||||| ||| || |||||||||  ||||| ||||||  |||||||||||||||| |||||  |||||||||||| |||||| ||||| |    
T  20378982 taattaatggaaaatgttaatttatgcccttaatacacaagttaatgattcaaatatagaaataaattattagaatgtgtgcattttatttagtctttaa 20379081  T
Q  671 ctttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    ||||| |||| | || |||||||||||||||||  || |||||||||||||  |||||||||||||    
T  20379082 cttttaaatgca-ttgaatgcacaaaattttagagaacatttcttcttttgagtttcttaacatgt 20379146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 614 - 736
Target Start/End: Complemental strand, 28392265 - 28392143
Alignment:
Q  614 aatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttc 713  Q
    |||| |||||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||||||||   ||||||||    
T  28392265 aatgaatcaaataaacaaatagtttattgaaatgtgtgcattacatttaatctttaactttttaatgta-ttgaatgcacaaaattttaaagaatatttc 28392167  T
Q  714 ttctttt-ggttttcttaacatgt 736  Q
    ||||||| ||||||||| ||||||    
T  28392166 ttcttttaggttttcttgacatgt 28392143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 628 - 743
Target Start/End: Complemental strand, 12789982 - 12789868
Alignment:
Q  628 agaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttc 727  Q
    ||||||||||| |||||||| || ||||| ||||||||||| |||||||||| ||||  ||| || |||||||||| |||||||| ||||||||  ||||    
T  12789982 agaaataattttttgaaatgcgtacattacatttaatctttaactttttaataaattg-aatacataaaattttagaaaatatttattcttttgagtttc 12789884  T
Q  728 ttaacatgtgccctaa 743  Q
    ||||||||||||||||    
T  12789883 ttaacatgtgccctaa 12789868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 621 - 741
Target Start/End: Original strand, 32733633 - 32733752
Alignment:
Q  621 caaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttctttt 720  Q
    ||||| |||||||||| ||||| ||| ||||||||| |||||||| || |  ||||||||||||  |||||||||| ||| || ||||||||||| ||||    
T  32733633 caaatgtagaaataatgtattggaatctgtgcattaaatttaatcgttaatgttttaatgaattg-aatgcacaaagtttaagaaaatatttcttttttt 32733731  T
Q  721 ggttttcttaacatgtgccct 741  Q
    || ||||||||||||||||||    
T  32733732 ggatttcttaacatgtgccct 32733752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 575 - 681
Target Start/End: Complemental strand, 39990861 - 39990755
Alignment:
Q  575 tattgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttt 674  Q
    |||| ||||||||||||||||||||| ||  ||||| |||||| |||||| ||  |||||||||||||||||||||| |||| ||||||| ||  |||||    
T  39990861 tattaggaaatgctaacttgtgccctcaagacacaagttaatgaatcaaagatgaaaataatttattgaaatgtgtgaattacatttaatattaaacttt 39990762  T
Q  675 ttaatga 681  Q
    |||||||    
T  39990761 ttaatga 39990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 377 - 568
Target Start/End: Original strand, 19594488 - 19594679
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    ||||||||||||| | |||| |||||||||||| ||||| |   ||| |||||||| |||||||| ||||| ||||  ||||| ||||||||  ||||||    
T  19594488 aaactcttatatgaacacaatcacaaatgataaatatttagatacactcatatcaa-ttgaaaaaattaaatcaaaaataattaaatcacatatatcaac 19594586  T
Q  476 atcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||| ||| ||| |||||||| ||||   |||||||| | |||| | |||||||||| |||||   |||| || |||||||||||||||    
T  19594587 atcatttaatttaattttcttttaacttttacttttgatgtaaatgtgtctaaatatttatcatttaaagttgtttctatagaagaatttctc 19594679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 55339403 - 55339475
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaa 258  Q
    ||||||||||||| | ||  || |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55339403 acaagccaaaatgtaattaaattaccagaagtaattcatctcgcacaaggtgtgcaaaagagaatcacttaaa 55339475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 582 - 737
Target Start/End: Complemental strand, 49447715 - 49447561
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||| ||||| ||||  ||||||||||||  ||||||||| |||||| |||||| |||||||||||| |||||| ||||| |||||| ||||     
T  49447715 aaatgttaactcgtgcctttaagacacaaattaatgattcaaatataaaaataaattattggaatgtgtgcattttatttagtctttaacttttaaatgc 49447616  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    | || ||| ||||| ||||||   || |||| ||||||||  ||||||||||||||    
T  49447615 a-ttgaatacacaatattttaaagaacattttttcttttgagtttcttaacatgtg 49447561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 612 - 734
Target Start/End: Complemental strand, 37700359 - 37700239
Alignment:
Q  612 ttaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatt 711  Q
    |||||| |||||||||  ||||| ||||||| ||||||||||||||||||||| ||  | ||||||||||| || |||||||| ||||||||  |||| |    
T  37700359 ttaatgaatcaaatatgaaaatagtttattggaatgtgtgcattatatttaattttaaattttttaatgaa-ttgaatgcacacaattttagagaatagt 37700261  T
Q  712 tcttcttttggttttcttaacat 734  Q
    |||| |||| | |||||||||||    
T  37700260 tctt-ttttaggtttcttaacat 37700239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 476
Target Start/End: Original strand, 50293606 - 50293690
Alignment:
Q  393 acaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaaca 476  Q
    ||||||||||||||||| |||| |||  ||| |||||||||| ||||||||| |||||||  ||||| |||||||||||||||||    
T  50293606 acaagcacaaatgataaatattcgggtacactcatatcaaatagaaaaattttaaacaaaaataattaaatcacatcaatcaaca 50293690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 638 - 733
Target Start/End: Original strand, 38627754 - 38627848
Alignment:
Q  638 tattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaaca 733  Q
    |||||||||||||||||| |||||||| ||| ||||||||||  |||| |||| | |||||||||| |||| ||||||||||| | ||| ||||||    
T  38627754 tattgaaatgtgtgcattgtatttaatatttaactttttaat-catttaaatgtataaaattttagaaaatgtttcttcttttaggtttattaaca 38627848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 612 - 684
Target Start/End: Complemental strand, 49230123 - 49230053
Alignment:
Q  612 ttaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaatt 684  Q
    |||||| |||||||||| |||  || |||||||||||||| |||||||||||||||| ||||||||| |||||    
T  49230123 ttaatgaatcaaatataaaaa--atatattgaaatgtgtgtattatatttaatcttttactttttaaagaatt 49230053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 588 - 646
Target Start/End: Original strand, 19664073 - 19664131
Alignment:
Q  588 taacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaat 646  Q
    |||||||||||||||||||| || |||||| |||||||||| ||||| ||| |||||||    
T  19664073 taacttgtgcccttaaagcataagttaatggatcaaatataaaaatattttgttgaaat 19664131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 499 - 561
Target Start/End: Original strand, 54449892 - 54449954
Alignment:
Q  499 aatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    ||||||| ||||| |||| | ||||||||||||||||| ||||| | ||||||||||||||||    
T  54449892 aatttttctatttaatgtcaatgtgcccaaatatttatcatttacgattgtgtccatagaaga 54449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 630 - 743
Target Start/End: Original strand, 20796419 - 20796530
Alignment:
Q  630 aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttctt 729  Q
    |||| |||| ||| |||||||| ||| |||||||||| | |||||||||| ||||  |||||| |||| | |||  |||||||||||||||||  |||||    
T  20796419 aaattattttttggaatgtgtgtattttatttaatctctcactttttaataaattg-aatgcataaaagtctagagaatatttcttcttttgg-gttctt 20796516  T
Q  730 aacatgtgccctaa 743  Q
    ||||||||| ||||    
T  20796517 aacatgtgctctaa 20796530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 581 - 650
Target Start/End: Original strand, 38703651 - 38703720
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgt 650  Q
    ||||||||||| ||||| ||||||| |||| |||||  |||||||||| ||||| ||||||| |||||||    
T  38703651 gaaatgctaacctgtgctcttaaagtacaagttaataaatcaaatatataaatagtttattggaatgtgt 38703720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 46690623 - 46690704
Alignment:
Q  424 catatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    ||||||||||  ||||||||||||||||  |||||  || | |||||||||||||||||| |||  |||| |||||||||||    
T  46690623 catatcaaatgaaaaaatttaaaacaaaaataattagatgatatcaatcaacatcatttattttatttcttttttaattttt 46690704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 55339533 - 55339593
Alignment:
Q  317 aaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatg 374  Q
    |||||||||||||||||||||| |||  ||||||||||||| |||||||||||| ||||||    
T  55339533 aaaacaaagaagattacatgaatatacccatacaagacatagggtgttgccaccagtcatg 55339593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 44685373 - 44685433
Alignment:
Q  445 aaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||  |||||||||||||||||| || |||||| | ||| |||||||||||||||||    
T  44685373 aaacaaaactaatttaatcacatcaattaatatcattgaatttcattctcttttaattttt 44685433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 505
Target Start/End: Original strand, 19582348 - 19582399
Alignment:
Q  454 taatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    ||||| |||||||||||||||||||||||| ||||||| || ||||| ||||    
T  19582348 taattaaatcacatcaatcaacatcatttaattttattttcgtttaactttt 19582399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 30187273 - 30187307
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||| ||||||||||||||||||||||||||    
T  30187273 attcatctcgcacaaggtgtgcaaaagagaatcac 30187307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 33690979 - 33690898
Alignment:
Q  78 tgtatatttattgttgaccgccatcttttttccaccaaccttcatgatttccgcaaagccacgttttgatattggttaattat 160  Q
    |||||||||||  ||||||| ||| ||||| |||||||||| ||||| |||||||| || | | |||| ||||||||||||||    
T  33690979 tgtatatttatcattgaccgtcat-tttttcccaccaacctccatgaattccgcaatgctatgctttgctattggttaattat 33690898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 638 - 743
Target Start/End: Original strand, 42760416 - 42760523
Alignment:
Q  638 tattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttt---tggttttcttaacat 734  Q
    ||||| ||||||||||||| ||||||||||| |  |||||||||| || |||||||||| ||| ||  ||||||| || |||   ||| |||||||||||    
T  42760416 tattggaatgtgtgcattaaatttaatctttaatgttttaatgaa-ttgaatgcacaaagtttaagagaatattttttttttttatggatttcttaacat 42760514  T
Q  735 gtgccctaa 743  Q
    | |||||||    
T  42760515 gcgccctaa 42760523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 9762839 - 9762774
Alignment:
Q  577 ttgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattg 642  Q
    |||||||||||||||||||| |  ||| |||||||||||||  |||||  |||||||| |||||||    
T  9762839 ttgggaaatgctaacttgtgtcgataaggcacaaattaatgagtcaaaagtagaaatattttattg 9762774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 74; Significance: 4e-33; HSPs: 2)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 74; E-Value: 4e-33
Query Start/End: Original strand, 377 - 568
Target Start/End: Complemental strand, 1317 - 1133
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    ||||||||||||||| |||| |||||||||||| ||||||||  ||| || |||||||  |||||   |||| ||   ||||| ||||||||||||||||    
T  1317 aaactcttatatggacacaaccacaaatgataaatatttggggacactcacatcaaat--aaaaa---aaaataa---taattgaatcacatcaatcaac 1226  T
Q  476 atcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||||| | ||||| |||| ||||||| ||||||| |||||||| ||||||    
T  1225 atcatttagttttattctcttttagtttttgcatttgatatgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctc 1133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786; HSP #2
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 561
Target Start/End: Original strand, 1253 - 1313
Alignment:
Q  501 tttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    ||||| |||||||||||||||| ||||||||||||| |||| || ||||||||||| ||||    
T  1253 tttttttatttgatgtgagtgtccccaaatatttatcatttgtggttgtgtccatataaga 1313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-29; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 588 - 743
Target Start/End: Original strand, 40740672 - 40740826
Alignment:
Q  588 taacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaatttta 687  Q
    ||||||||||||||||   |||| |||| | ||||||||||||| || ||||||  ||||||| ||||| ||||||||||| ||||||||||| |||| |    
T  40740672 taacttgtgcccttaagatacaagttaaagaatcaaatatagaagtagtttattagaatgtgtacattacatttaatctttaactttttaatg-atttga 40740770  T
Q  688 atgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    ||||||||||||||||  ||||||| ||||||| | ||| ||||||||||||||||    
T  40740771 atgcacaaaattttagagaatatttattcttttaggttttttaacatgtgccctaa 40740826  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-26
Query Start/End: Original strand, 578 - 743
Target Start/End: Complemental strand, 4993392 - 4993230
Alignment:
Q  578 tgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttttta 677  Q
    ||||||||| ||| |||||| ||||| ||| || ||||||  |||||||||||||||||  |||  ||| |||| |||  ||||||||||| ||||||||    
T  4993392 tgggaaatgttaatttgtgctcttaaggcataagttaatgattcaaatatagaaataat--atttgaatatgtgtattgcatttaatctttaacttttta 4993295  T
Q  678 atgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||||||  |||||||||||||||||  |||||||||||||||   ||||||||||||||||||||    
T  4993294 atgaatta-aatgcacaaaattttagagaatatttcttcttttatatttcttaacatgtgccctaa 4993230  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-26
Query Start/End: Original strand, 606 - 743
Target Start/End: Complemental strand, 39108672 - 39108536
Alignment:
Q  606 cacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagga 705  Q
    ||||| ||||||  ||||||||| ||||||||||||| ||||||||||||  |||||| |||| | |||||||| |||| || |||||||||||||||      
T  39108672 cacaagttaatgattcaaatataaaaataatttattggaatgtgtgcattgcatttaaactttaattttttaatcaattata-tgcacaaaattttagag 39108574  T
Q  706 aatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||||||||| |||||  ||||||||||||||||||||    
T  39108573 aatatttcttattttgagtttcttaacatgtgccctaa 39108536  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 593 - 736
Target Start/End: Original strand, 32062259 - 32062401
Alignment:
Q  593 tgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttga-ctttttaatgaattttaatgc 691  Q
    |||| ||||||  ||||| |||||| |||||||||||||||| || |||| ||||||| ||||| ||||||||||| | ||||||||||||||  |||||    
T  32062259 tgtgtccttaagtcacaagttaatgaatcaaatatagaaatagtt-attggaatgtgtacattacatttaatcttttatctttttaatgaattg-aatgc 32062356  T
Q  692 acaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    |||||||||||  |||||||||||||||||  |||||||||||||    
T  32062357 acaaaattttaaaaaatatttcttcttttgagtttcttaacatgt 32062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-22
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 27420359 - 27420441
Alignment:
Q  206 ataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtgcca 288  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| |||  |||||||| |||||||||| |||||||    
T  27420359 ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtgcca 27420441  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-21
Query Start/End: Original strand, 425 - 518
Target Start/End: Original strand, 39141873 - 39141966
Alignment:
Q  425 atatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtga 518  Q
    |||||||||  ||||||||||||||||  ||||| ||||| ||||||||| || ||||| |||||||||||||||||||||| |||||||||||    
T  39141873 atatcaaatgaaaaaatttaaaacaaaaataattaaatcatatcaatcaatattatttaattttattctcttttaatttttgcatttgatgtga 39141966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 408 - 566
Target Start/End: Complemental strand, 3771713 - 3771558
Alignment:
Q  408 aatatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgt 507  Q
    ||||||||||| ||  || || ||||  ||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||| ||   ||||| |    
T  3771713 aatatttgggcacattcacattaaatgaaaaaaattaaaacaaaaataatataatcacatcaatcaacatcatttagttttattctcatt---ttttttt 3771617  T
Q  508 atttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttc 566  Q
    |||| || ||||||||| ||||| ||| | ||||| | ||||||  |||||||| ||||    
T  3771616 atttaatttgagtgtgctcaaatgtttttcatttaagattgtgtttatagaagagtttc 3771558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 603 - 703
Target Start/End: Complemental strand, 4989357 - 4989258
Alignment:
Q  603 aagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaatttta 702  Q
    |||||||| |||||  |||||||||||||||||||||||| |||||||| |||| |||||||||||  ||||||||| || |  ||||||||||||||||    
T  4989357 aagcacaagttaattaatcaaatatagaaataatttattgtaatgtgtgtattacatttaatctttagctttttaat-aaatagaatgcacaaaatttta 4989259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 596 - 719
Target Start/End: Original strand, 36434658 - 36434781
Alignment:
Q  596 gcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattata-tttaatctttgactttttaatgaattttaatgcaca 694  Q
    |||||||| |||||  ||||||  ||||||||| ||||||||||||||||||||||||||  | |||||||||| ||||||| || || || ||||||||    
T  36434658 gcccttaaggcacatgttaatgattcaaatataaaaataatttattgaaatgtgtgcattgcattttaatctttcacttttttat-aaattgaatgcaca 36434756  T
Q  695 aaattttaggaaatatttcttcttt 719  Q
    ||||||||   ||||||||||||||    
T  36434757 aaattttaaagaatatttcttcttt 36434781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 625 - 737
Target Start/End: Complemental strand, 44976228 - 44976118
Alignment:
Q  625 tatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggtt 724  Q
    |||| |||||||||||||||| |||||||||| ||||||||||| | |||||| |||| || || ||||| ||||||||  ||||||| ||||||||| |    
T  44976228 tataaaaataatttattgaaaagtgtgcatta-atttaatctttaattttttattgaa-ttaaacgcacataattttagagaatattttttcttttggat 44976131  T
Q  725 ttcttaacatgtg 737  Q
    |||||| ||||||    
T  44976130 ttcttagcatgtg 44976118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 582 - 701
Target Start/End: Complemental strand, 5957156 - 5957038
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| |||||||||  ||||| | |||| |||||| |||||   |||||||||||||||| |||||| |||||  || |||||||| ||||||||||||    
T  5957156 aaatgttaacttgtgttcttaaggtacaagttaatgaatcaatagtagaaataatttattggaatgtgcgcatttcatataatctttaactttttaatga 5957057  T
Q  682 attttaatgcacaaaatttt 701  Q
    | || |||||||||||||||    
T  5957056 a-ttgaatgcacaaaatttt 5957038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 579 - 739
Target Start/End: Complemental strand, 10361288 - 10361128
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatt-tattgaaatgtgtgcattatatttaatctttgacttttta 677  Q
    |||||||| ||||||||||||| || |||||| ||||||  ||||||||| ||| ||   ||||| | |||||| |||  ||||||| ||| ||||||||    
T  10361288 gggaaatgttaacttgtgccctcaaggcacaagttaatgattcaaatatataaaaaaacatattggattgtgtgtattgcatttaatatttaacttttta 10361189  T
Q  678 atgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    || | ||| ||||||||||||  |||  ||  ||||||||||||| ||||||||||||||||    
T  10361188 atca-tttaaatgcacaaaatcatagagaaagtttcttcttttggatttcttaacatgtgcc 10361128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 605 - 720
Target Start/End: Complemental strand, 11008139 - 11008025
Alignment:
Q  605 gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagg 704  Q
    |||||| ||||||  | |||||||| || ||||||||||||||||||||||  ||||||| ||| ||||||||||  |||| |||||||||||| ||||     
T  11008139 gcacaagttaatgatttaaatataggaaaaatttattgaaatgtgtgcattgaatttaatatttcactttttaat-catttaaatgcacaaaatgttaga 11008041  T
Q  705 aaatatttcttctttt 720  Q
     ||  |||||||||||    
T  11008040 taaagtttcttctttt 11008025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 650 - 743
Target Start/End: Complemental strand, 3727231 - 3727139
Alignment:
Q  650 tgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||||||| ||||||||||  ||||||||||||||  ||||||||||||||||  |||||||  ||||||| | ||| ||||||||||| ||||    
T  3727231 tgcattatttttaatctttagctttttaatgaattg-aatgcacaaaattttataaaatattcattcttttaggttttttaacatgtgctctaa 3727139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 600 - 713
Target Start/End: Original strand, 35878953 - 35879065
Alignment:
Q  600 ttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaatt 699  Q
    ||||| ||||| |||||  ||||||||||  ||| | |||||||||| ||||||||| ||||||||||| |||||| |||| |||| |||||| ||||||    
T  35878953 ttaaaacacaagttaataaatcaaatatatgaatgagttattgaaatatgtgcattaaatttaatctttaacttttcaatg-atttgaatgcataaaatt 35879051  T
Q  700 ttaggaaatatttc 713  Q
    | ||  ||||||||    
T  35879052 taagagaatatttc 35879065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 500
Target Start/End: Original strand, 30610865 - 30610909
Alignment:
Q  456 atttaatcacatcaatcaacatcatttagttttattctcttttaa 500  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  30610865 atttaatcacatcaatcaatatcatttagttttattttcttttaa 30610909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 574
Target Start/End: Original strand, 9300893 - 9301032
Alignment:
Q  436 aaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattt-ttgtatttgatgtgagtgtgcccaaatattt 534  Q
    ||||| ||||| ||||  ||||||| |||||||||| ||  ||||| | ||| ||||||||||||||| ||  |||| || |||||||||| |||| |||    
T  9300893 aaaaaattaaagcaaaattaatttagtcacatcaattaatgtcattgaatttcattctcttttaatttcttccattttatctgagtgtgcctaaatcttt 9300992  T
Q  535 attatttatgtttgtgtccatagaagaatttctcgttaat 574  Q
     | ||||| | || || |||||||||| ||||||||||||    
T  9300993 ttgatttaggcttctgaccatagaagactttctcgttaat 9301032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 663 - 737
Target Start/End: Original strand, 9210000 - 9210073
Alignment:
Q  663 atctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    |||||| ||||||||| |||||  ||||||||||||||| ||| |||||||||||||||  ||| ||||||||||    
T  9210000 atctttaactttttaaagaattg-aatgcacaaaatttttggatatatttcttcttttgaattttttaacatgtg 9210073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 648 - 738
Target Start/End: Complemental strand, 43027933 - 43027844
Alignment:
Q  648 tgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgc 738  Q
    ||||||| ||||||||| ||| |||||||||| ||||  |||||| |||||||||  || ||||| ||||||||  |||||||||||||||    
T  43027933 tgtgcatcatatttaatatttaactttttaataaattg-aatgcataaaattttaaaaattattttttcttttgagtttcttaacatgtgc 43027844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 505
Target Start/End: Complemental strand, 6924306 - 6924178
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    ||||||||||||  |||||| ||||||  |||| ||||||||| ||| || ||||||| |||||| ||||||||||  |||||  |||| |||||| |||    
T  6924306 aaactcttatataaatacaaccacaaagtataaatatttgggcacactcacatcaaatagaaaaaattaaaacaaaaataattagatcatatcaattaac 6924207  T
Q  476 atcatttagttttattctcttttaattttt 505  Q
     ||  ||| ||||||||||||||| |||||    
T  6924206 gtc-cttacttttattctcttttatttttt 6924178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 646 - 737
Target Start/End: Complemental strand, 70804 - 70714
Alignment:
Q  646 tgtgtgcattatatttaatctttgac-tttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    ||||||||||| ||||||| || ||| |||||||| ||||| ||| |||||||||| ||| ||||||||||||||||  ||||||||| ||||    
T  70804 tgtgtgcattaaatttaat-ttcgacctttttaataaattt-aatacacaaaatttaagggaatatttcttcttttgaatttcttaacttgtg 70714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 580 - 664
Target Start/End: Original strand, 32268789 - 32268872
Alignment:
Q  580 ggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaat 664  Q
    ||||||||||||||||| |||  | |||||||||||||  | ||||||| |||||||||||| |||| ||| ||||| |||||||    
T  32268789 ggaaatgctaacttgtgtcctcca-gcacaaattaatgatttaaatataaaaataatttattaaaatatgttcattacatttaat 32268872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 536
Target Start/End: Original strand, 6924242 - 6924277
Alignment:
Q  501 tttttgtatttgatgtgagtgtgcccaaatatttat 536  Q
    ||||| ||||||||||||||||||||||||||||||    
T  6924242 tttttctatttgatgtgagtgtgcccaaatatttat 6924277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 607 - 737
Target Start/End: Original strand, 19174067 - 19174197
Alignment:
Q  607 acaaattaatgcatcaaatatagaaataat-ttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagga 705  Q
    |||| ||||||  ||||||||||||| ||  |||||  ||||||||||||  ||||||| ||| ||||||||||  |||| |||||| |||||||||       
T  19174067 acaagttaatgattcaaatatagaaaaaaaattatttgaatgtgtgcattgcatttaatatttaactttttaat-catttaaatgcataaaattttaaag 19174165  T
Q  706 aatatttcttcttttggttttcttaacatgtg 737  Q
    ||| ||||||||||| | ||| ||||||||||    
T  19174166 aatgtttcttcttttaggttttttaacatgtg 19174197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 42747305 - 42747271
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||| ||||||||||||||||||||||||||    
T  42747305 attcatctcgcacaaggtgtgcaaaagagaatcac 42747271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 64; Significance: 4e-27; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 64; E-Value: 4e-27
Query Start/End: Original strand, 628 - 739
Target Start/End: Complemental strand, 50714 - 50604
Alignment:
Q  628 agaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttc 727  Q
    ||||||||||||||| |||||||||||| |||||||||| | | |||||||| ||||  |||||||||||||||||  ||||||||||||||||| ||||    
T  50714 agaaataatttattggaatgtgtgcattgtatttaatctctaagtttttaatcaatta-aatgcacaaaattttagagaatatttcttcttttgggtttc 50616  T
Q  728 ttaacatgtgcc 739  Q
    ||||||||||||    
T  50615 ttaacatgtgcc 50604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-26; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-26
Query Start/End: Original strand, 582 - 739
Target Start/End: Original strand, 2616973 - 2617129
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    |||||||||||||||| |||||| ||||| |||||| |||||||||| ||||| |||||||  |||| ||||||| |||||| |||| || ||||||||     
T  2616973 aaatgctaacttgtgctcttaaaacacaagttaatgaatcaaatataaaaatagtttattgggatgtatgcattacatttaacctttaacgttttaatgt 2617072  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    | || |||||| ||||||||||  ||||||| ||||||| | ||| ||||||||||||    
T  2617073 a-ttgaatgcataaaattttagagaatatttattcttttagattttttaacatgtgcc 2617129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-26
Query Start/End: Original strand, 582 - 739
Target Start/End: Complemental strand, 9429723 - 9429568
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||||||||||| || |||||| ||||||  | |||||| ||||||||| |||||||||||||||||  ||||||||||| | |||||||| |    
T  9429723 aaatgttaacttgtgccctcaa-gcacaagttaatgatttaaatatggaaataattcattgaaatgtgtgcattgcatttaatctttaattttttaatca 9429625  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    | || |||||| |||||||||| ||||||||||||||| ||  ||||||| |||||||    
T  9429624 a-ttaaatgcataaaattttagaaaatatttcttctttcgggcttcttaatatgtgcc 9429568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 434 - 561
Target Start/End: Complemental strand, 278259 - 278131
Alignment:
Q  434 tgaaaaatttaaaacaaatg-taatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatat 532  Q
    ||||||| ||||||||||   |||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||| ||| ||||| |||||||    
T  278259 tgaaaaaattaaaacaaaaaataatttaatcacatcaatcaacgtcatttgattttattctcttttaatttttttatttgatatgaatgtgctcaaatat 278160  T
Q  533 ttattatttatgtttgtgtccatagaaga 561  Q
    || |||||||   |||||| |||||||||    
T  278159 tttttatttagagttgtgttcatagaaga 278131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 582 - 704
Target Start/End: Complemental strand, 30323199 - 30323078
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    ||||| ||||||||| |||| | |||||  ||||||||||||||||||||||| ||||||| ||||| || |||| ||||||||||| ||||||||||||    
T  30323199 aaatgttaacttgtgtcctttaggcacatgttaatgcatcaaatatagaaatagtttattggaatgtatgtattacatttaatctttaactttttaatga 30323100  T
Q  682 attttaatgcacaaaattttagg 704  Q
    | || ||||||| ||||||||||    
T  30323099 a-ttgaatgcactaaattttagg 30323078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-23
Query Start/End: Original strand, 580 - 733
Target Start/End: Complemental strand, 17515489 - 17515337
Alignment:
Q  580 ggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaat 679  Q
    ||||||| ||||||||||||| ||   |||| ||||||  ||||||||  ||||||||||||||||| |||| |||  ||||||||||| ||||||||||    
T  17515489 ggaaatgttaacttgtgccctcaagatacaatttaatgattcaaatatgtaaataatttattgaaatatgtgtattgcatttaatctttaactttttaat 17515390  T
Q  680 gaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaaca 733  Q
     || || |||| ||||||||||||  ||||||||||||||| | ||||||||||    
T  17515389 caa-ttaaatgtacaaaattttagagaatatttcttcttttaggtttcttaaca 17515337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 464 - 568
Target Start/End: Complemental strand, 1303458 - 1303355
Alignment:
Q  464 acatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaat 563  Q
    ||||||||||||||||||||||||||||||  |||| ||||| |||||||||||||||||  ||||||||| | ||||| | |||||||||||||||| |    
T  1303458 acatcaatcaacatcatttagttttattcttattta-tttttctatttgatgtgagtgtgttcaaatatttttcatttaggattgtgtccatagaagagt 1303360  T
Q  564 ttctc 568  Q
    |||||    
T  1303359 ttctc 1303355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 579 - 743
Target Start/End: Original strand, 2359630 - 2359793
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    ||||||||||||||||| |  | || |||||||||||||  |||| ||||||||||||||||||||| |||||||||| |||||||| || ||||||||     
T  2359630 gggaaatgctaacttgtactttaaaggcacaaattaatgattcaagtatagaaataatttattgaaaagtgtgcattacatttaatcgttaactttttat 2359729  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    | || || || |||||||||| ||   ||||||| ||||||| | ||| ||||||||||| ||||    
T  2359730 tcaa-ttaaaagcacaaaattctaaagaatattttttcttttagattttttaacatgtgctctaa 2359793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 186 - 378
Target Start/End: Complemental strand, 12336239 - 12336046
Alignment:
Q  186 acaagccaaaatgaatttttataaccagaagtaattcatcttgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 285  Q
    ||||||||||||||| ||  |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||  ||||||| | ||||||||  ||||    
T  12336239 acaagccaaaatgaaatta-ataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcatttaaaacagatacaata-tcagttcatcggtg 12336142  T
Q  286 ccataaatacagacatcataccttcacaactaaaacaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    ||| ||   |||||| |     | |  ||| |||||||||||||||||||| |||||  ||||||||||||| |||||||||||| ||||||||||    
T  12336141 ccacaataccagacaccgagattactaaaccaaaacaaagaagattacatgtaaatacccatacaagacatatggtgttgccaccagtcatggtaa 12336046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 443 - 523
Target Start/End: Complemental strand, 33941006 - 33940927
Alignment:
Q  443 taaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtg 523  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  33941006 taaaacaaaaataatttaatcacatcaatcaacatcatttaattttattct-ttttaatttttttatttgatgtgagtgtg 33940927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 582 - 736
Target Start/End: Complemental strand, 24548140 - 24547989
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    |||| ||||||||||| ||||  |||||| | |||| ||||||||||  |||| ||||||||||  ||||||||| ||||||||||| ||||||||||||    
T  24548140 aaatactaacttgtgctcttatggcacaagtgaatgaatcaaatata--aatagtttattgaaaaatgtgcattacatttaatctttaactttttaatga 24548043  T
Q  682 attttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgt 736  Q
    | || |||||||| ||||||||  ||||||| |||||||   |||||||||||||    
T  24548042 a-ttgaatgcacataattttagagaatattttttcttttatgtttcttaacatgt 24547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-20
Query Start/End: Original strand, 636 - 739
Target Start/End: Original strand, 4844441 - 4844543
Alignment:
Q  636 tttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatg 735  Q
    ||||||| |||||||| |||||||||||| ||| |||||||||| ||||  ||||||||||||||||  |||||||||||||||| | |||||||||||     
T  4844441 tttattggaatgtgtgtattatatttaatatttaactttttaataaattg-aatgcacaaaattttaaaaaatatttcttcttttaggtttcttaacata 4844539  T
Q  736 tgcc 739  Q
    ||||    
T  4844540 tgcc 4844543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 408 - 524
Target Start/End: Complemental strand, 2308440 - 2308324
Alignment:
Q  408 aatatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaa-tttttg 506  Q
    ||||||||||| ||| || |||||||  ||||||| ||||||||  |||| ||||||||||||||||||| || ||||||||||||  ||||| |||||     
T  2308440 aatatttgggcacactcacatcaaatcaaaaaatt-aaaacaaaaataatataatcacatcaatcaacattatctagttttattcttatttaattttttt 2308342  T
Q  507 tatttgatgtgagtgtgc 524  Q
    ||||||||||||||||||    
T  2308341 tatttgatgtgagtgtgc 2308324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 630 - 743
Target Start/End: Original strand, 13243778 - 13243890
Alignment:
Q  630 aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttctt 729  Q
    ||||||| ||||| ||||||||||||| ||||||| ||| |  ||||||||||||  |||| ||||| ||| || ||||||||||| |||||| ||||||    
T  13243778 aaataatgtattggaatgtgtgcattaaatttaatttttaatgttttaatgaattg-aatgtacaaagtttaagaaaatatttctttttttggatttctt 13243876  T
Q  730 aacatgtgccctaa 743  Q
    ||||||||||||||    
T  13243877 aacatgtgccctaa 13243890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 400 - 570
Target Start/End: Complemental strand, 27992010 - 27991838
Alignment:
Q  400 caaatgataatatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttag-ttttattctctttt 498  Q
    ||||||| || |||| ||| |||  |||||||||  ||||| ||||||||||  |||| |||||||||||||||||||| ||||| |||||||||  |||    
T  27992010 caaatgaaaaaatttaggcacacttatatcaaataaaaaaaattaaaacaaaaataatataatcacatcaatcaacatcttttagtttttattcttattt 27991911  T
Q  499 aa-tttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctcgt 570  Q
    || ||||| ||||| |||||| ||||| ||||||||  | ||||| | |||||  ||||||||||||| ||||    
T  27991910 aattttttttatttaatgtgaatgtgctcaaatattattcatttagggttgtgctcatagaagaatttatcgt 27991838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-18
Query Start/End: Original strand, 582 - 743
Target Start/End: Complemental strand, 33755594 - 33755428
Alignment:
Q  582 aaatgctaacttgtgcccttaaagca------caaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttt 675  Q
    |||||||||||||||||||||| |||      ||| || ||| ||||| |||||||| | ||||||||||||| || |||| ||||||| ||| | ||||    
T  33755594 aaatgctaacttgtgcccttaaggcaaaggcacaagtttatgaatcaattatagaaacattttattgaaatgtttgtattacatttaatttttaattttt 33755495  T
Q  676 taatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||| ||||  ||||  |||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||    
T  33755494 taataaattg-aatgggcaaaattttagggaatatgtcttcttttgggtttcttaacatatgctctaa 33755428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 582 - 743
Target Start/End: Original strand, 9318697 - 9318856
Alignment:
Q  582 aaatgctaacttgtgcccttaaagcacaa------attaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttt 675  Q
    |||||||||||||||||||||| || |||      |||| || ||||| |||||||||||||||||| ||||| |||||||  |||||| ||||| |       
T  9318697 aaatgctaacttgtgcccttaaggcccaatcatagattagtgaatcaattatagaaataatttattggaatgtctgcattacttttaatttttgaat--- 9318793  T
Q  676 taatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
         || || |||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||    
T  9318794 -----aaattgaatgcacaaaattttagagaatatttcttcttttgaatttcttaacatgtgccctaa 9318856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 644 - 739
Target Start/End: Complemental strand, 11842361 - 11842267
Alignment:
Q  644 aatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgcc 739  Q
    ||||||||||||  ||||||||| | |||||| | ||||||  |||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  11842361 aatgtgtgcattgcatttaatctgtaacttttcagtgaattg-aatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgcc 11842267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 6e-17
Query Start/End: Original strand, 577 - 743
Target Start/End: Complemental strand, 3159756 - 3159591
Alignment:
Q  577 ttgggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgacttttt 676  Q
    |||||||||| |||||||| ||||||  |||||| || |    |||||| |||||||||| ||||| |||| || ||||| ||||||||||| |  ||||    
T  3159756 ttgggaaatgttaacttgtacccttactgcacaagtttagaagtcaaatgtagaaataatgtattggaatgcgtacattaaatttaatctttaatgtttt 3159657  T
Q  677 aatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccctaa 743  Q
    |||||| || |||||||||| ||| ||  |||||||||| ||||   ||||||||||||||||||||    
T  3159656 aatgaa-ttgaatgcacaaagtttaagagaatatttctttttttaaatttcttaacatgtgccctaa 3159591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 6e-17
Query Start/End: Original strand, 427 - 566
Target Start/End: Complemental strand, 4980568 - 4980433
Alignment:
Q  427 atcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaatttttgtatttgatgtgagtgtgccc 526  Q
    ||||||| |||||| |||||| |||  ||| | || ||||||||||||  | ||||||||||||| | | |||||||||||||||||||||| |||        
T  4980568 atcaaatagaaaaaattaaaataaaaataaataaaccacatcaatcaatgttatttagttttattttttattaatttttgtatttgatgtgaatgt---- 4980473  T
Q  527 aaatatttattatttatgtttgtgtccatagaagaatttc 566  Q
    |||||||||||||||||| |||||||  ||||| ||||||    
T  4980472 aaatatttattatttatgattgtgtcggtagaataatttc 4980433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 630 - 739
Target Start/End: Original strand, 3337656 - 3337764
Alignment:
Q  630 aaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttctt 729  Q
    ||||||||||||| ||||||||||||  |||||||| || |||||||||| || || |||||| ||||||||||  |||| ||||||||||   ||||||    
T  3337656 aaataatttattggaatgtgtgcattgcatttaatcgttaactttttaatcaa-ttaaatgcataaaattttagagaataattcttcttttaaatttctt 3337754  T
Q  730 aacatgtgcc 739  Q
    ||||||||||    
T  3337755 aacatgtgcc 3337764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 579 - 737
Target Start/End: Complemental strand, 2557435 - 2557279
Alignment:
Q  579 gggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaa 678  Q
    |||||||| ||| ||||||  ||||  || || |||||| |||||||||| ||||| ||||||  |||||||| |||||||||||||||| |||| |||     
T  2557435 gggaaatgttaatttgtgctattaagacataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaacttcttag 2557336  T
Q  679 tgaattttaatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtg 737  Q
    || || | ||||||| || ||||||  || |||| || |||||| ||||||||||||||    
T  2557335 tg-atgtgaatgcac-aacttttagagaacatttatttttttgggtttcttaacatgtg 2557279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 542
Target Start/End: Original strand, 2308402 - 2308449
Alignment:
Q  495 ttttaatttttgtatttgatgtgagtgtgcccaaatatttattattta 542  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||    
T  2308402 ttttaattttttgatttgatgtgagtgtgcccaaatattttttattta 2308449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 623 - 665
Target Start/End: Original strand, 29680042 - 29680084
Alignment:
Q  623 aatatagaaataatttattgaaatgtgtgcattatatttaatc 665  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  29680042 aatatagaaataatttattgaaatttgtgcattgtatttaatc 29680084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 568
Target Start/End: Complemental strand, 23126826 - 23126766
Alignment:
Q  508 atttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaagaatttctc 568  Q
    |||| ||||||||||||| |||||||||| |||| || ||||||| |||||||| ||||||    
T  23126826 attttatgtgagtgtgcctaaatatttatcatttgtgattgtgtctatagaagagtttctc 23126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 505
Target Start/End: Original strand, 2091392 - 2091443
Alignment:
Q  454 taatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||||||||||||| || || ||| | |||||||||||||||||||||    
T  2091392 taatttaatcacatcaattaatattattgaattttattctcttttaattttt 2091443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 3415711 - 3415672
Alignment:
Q  214 aagtaattcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  3415711 aagtaattcatcttgcacaaggcgtgcataagagaatcac 3415672  T

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Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 491
Target Start/End: Original strand, 23126769 - 23126883
Alignment:
Q  377 aaactcttatatggatacaagcacaaatgataa-tatttgggcgcacacatatcaaattgaaaaatttaaaacaaatgtaatttaatcacatcaatcaac 475  Q
    |||||||| ||| || |||| |||||||||||| ||||| ||| ||| || || |||| |||||| ||||  ||||  ||||| ||||||||||||||||    
T  23126769 aaactcttctatagacacaatcacaaatgataaatatttaggcacactcacataaaatggaaaaaattaat-caaaaataattaaatcacatcaatcaac 23126867  T
Q  476 atcatttagttttatt 491  Q
    ||| |||| |||||||    
T  23126868 atcgtttaattttatt 23126883  T

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Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 605 - 720
Target Start/End: Original strand, 28011631 - 28011744
Alignment:
Q  605 gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagg 704  Q
    |||||| |||||| ||||||||||| ||   ||| ||||||||||||||||  ||||||| ||||| ||| |||| |||   ||| || |||||||||||    
T  28011631 gcacaagttaatgaatcaaatatagtaact-tttgttgaaatgtgtgcatttaatttaatttttgaatttgtaataaataa-aattcaaaaaattttagg 28011728  T
Q  705 aaatatttcttctttt 720  Q
    |||||||||| |||||    
T  28011729 aaatatttctactttt 28011744  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 664
Target Start/End: Original strand, 2615105 - 2615171
Alignment:
Q  598 ccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaat 664  Q
    |||||| | |||| |||||| |||||||||| ||||| || |||  |||||||||||||||||||||    
T  2615105 ccttaatgtacaagttaatgaatcaaatataaaaatagttcattagaatgtgtgcattatatttaat 2615171  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 687 - 741
Target Start/End: Complemental strand, 7509710 - 7509656
Alignment:
Q  687 aatgcacaaaattttaggaaatatttcttcttttggttttcttaacatgtgccct 741  Q
    |||||||||||||| || | || ||||| ||||||| ||||||||||||||||||    
T  7509710 aatgcacaaaatttaagaacatgtttctacttttgggtttcttaacatgtgccct 7509656  T

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Target: scaffold0050 (Bit Score: 53; Significance: 1e-20; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 619 - 743
Target Start/End: Original strand, 37208 - 37329
Alignment:
Q  619 atcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttctt 718  Q
    |||||| |||||||||  |||||| ||||||||||||| ||||||| ||| ||||||||| |||||  ||||||||||||||||  ||||||||||||||    
T  37208 atcaaaaatagaaataggttattggaatgtgtgcattacatttaat-tttaactttttaaagaattg-aatgcacaaaattttaa-aaatatttcttctt 37304  T
Q  719 ttggttttcttaacatgtgccctaa 743  Q
    || | ||| ||||||||||||||||    
T  37305 ttaggttttttaacatgtgccctaa 37329  T

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Target: scaffold0050; HSP #2
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 37844 - 37800
Alignment:
Q  637 ttattgaaatgtgtgcattatatttaatctttgactttttaatga 681  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||    
T  37844 ttattgaaatgtgtgcatcatatttaatctttaactttttaatga 37800  T

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Target: scaffold0119 (Bit Score: 51; Significance: 2e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 581 - 722
Target Start/End: Complemental strand, 22982 - 22844
Alignment:
Q  581 gaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatg 680  Q
    |||||| ||| ||||||||||||  |||||||||||    |||||||| ||||||||||||| || ||| |||| | ||||||||||| ||||||||||     
T  22982 gaaatgttaatttgtgcccttaagacacaaattaatatggcaaatatataaataatttattggaacgtgcgcat-acatttaatctttaactttttaata 22884  T
Q  681 aattttaatgcacaaaattttaggaaatatttcttcttttgg 722  Q
    ||||||  ||||||||||||||  ||||||||||| ||||||    
T  22883 aatttt--tgcacaaaattttataaaatatttctttttttgg 22844  T

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Target: scaffold0027 (Bit Score: 46; Significance: 2e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 631 - 740
Target Start/End: Original strand, 16852 - 16960
Alignment:
Q  631 aataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttaggaaatatttcttcttttggttttctta 730  Q
    ||||||||||| |||||||||||||  ||||||| ||| ||||||||||  |||| |||||| ||||||| |  |||||||| ||||||| | |||||||    
T  16852 aataatttattcaaatgtgtgcattgcatttaatatttaactttttaat-catttaaatgcataaaatttcaaaaaatatttattcttttagatttctta 16950  T
Q  731 acatgtgccc 740  Q
    ||||||||||    
T  16951 acatgtgccc 16960  T

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Target: scaffold0047 (Bit Score: 45; Significance: 9e-16; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 580 - 720
Target Start/End: Original strand, 66115 - 66254
Alignment:
Q  580 ggaaatgctaacttgtgcccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaat 679  Q
    ||||||| |||| |||| | ||||  ||||| |||||| ||||||| ||| |||| ||||||| |||   ||||||| ||||||| ||| |||||||| |    
T  66115 ggaaatgttaacgtgtgtctttaagacacaagttaatgaatcaaatgtaggaatattttattggaattcatgcattacatttaatttttaactttttagt 66214  T
Q  680 gaattttaatgcacaaaattttaggaaatatttcttctttt 720  Q
    |||||  |||||||||||||||||  |||||||||||||||    
T  66215 gaattg-aatgcacaaaattttagagaatatttcttctttt 66254  T

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Target: scaffold0329 (Bit Score: 43; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 598 - 744
Target Start/End: Original strand, 8184 - 8329
Alignment:
Q  598 ccttaaagcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaa 697  Q
    |||||| |||||| |||||  ||||||||||| ||   ||||||| ||||| ||||||| ||||||| |||||  || |||| ||||  |||||||||||    
T  8184 ccttaaggcacaagttaattaatcaaatatagtaactttttattggaatgtatgcattaaatttaatttttgaagttgtaataaattg-aatgcacaaaa 8282  T
Q  698 ttttaggaaatatttcttcttttggttttcttaacatgtgccctaac 744  Q
     ||||| ||| |||| | ||||||| ||||||| |||||||||||||    
T  8283 ctttagaaaacatttttacttttgggtttcttatcatgtgccctaac 8329  T

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Target: scaffold1609 (Bit Score: 37; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 561
Target Start/End: Original strand, 1 - 61
Alignment:
Q  501 tttttgtatttgatgtgagtgtgcccaaatatttattatttatgtttgtgtccatagaaga 561  Q
    ||||| |||||||||||||||| ||||||||||||| |||| || ||||||||||| ||||    
T  1 tttttttatttgatgtgagtgtccccaaatatttatcatttgtggttgtgtccatataaga 61  T

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Target: scaffold0211 (Bit Score: 34; Significance: 0.000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 504
Target Start/End: Original strand, 23393 - 23434
Alignment:
Q  463 cacatcaatcaacatcatttagttttattctcttttaatttt 504  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  23393 cacatcaatcaatatcattttgttttattctcttttaatttt 23434  T

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Target: scaffold0635 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 4325 - 4385
Alignment:
Q  445 aaacaaatgtaatttaatcacatcaatcaacatcatttagttttattctcttttaattttt 505  Q
    |||||||  |||||||||||||| |||  | |||||||| |||||||||||||||||||||    
T  4325 aaacaaaattaatttaatcacataaattgaaatcatttaattttattctcttttaattttt 4385  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 605 - 737
Target Start/End: Complemental strand, 122576 - 122445
Alignment:
Q  605 gcacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaattttaatgcacaaaattttagg 704  Q
    |||||| |||||| |||||||||| ||||| ||||||| || || || |||| ||||||||||| | |||||||| || || |||||||| ||||| ||     
T  122576 gcacaagttaatgaatcaaatataaaaatattttattggaacgtatgtattacatttaatctttaattttttaatcaa-ttgaatgcacataatttaaga 122478  T
Q  705 aaatatttcttcttttggttttcttaacatgtg 737  Q
     ||  ||| ||||||| | ||| ||||||||||    
T  122477 taaagtttattcttttagattttttaacatgtg 122445  T

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Target: scaffold1951 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 484 - 518
Alignment:
Q  219 attcatcttgcacaaggtgtgcaaaagagaatcac 253  Q
    |||||||| ||||||||||||||||||||||||||    
T  484 attcatctcgcacaaggtgtgcaaaagagaatcac 518  T

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Target: scaffold0343 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 14045 - 14106
Alignment:
Q  320 acaaagaagattacatgaaaata--catacaagacata-ggtgttgccacccgtcatggtaa 378  Q
    |||||||||||||||| ||||||  ||||||||| ||| |||||||||||| ||||||||||    
T  14045 acaaagaagattacattaaaatacccatacaagatatagggtgttgccaccagtcatggtaa 14106  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 247718 - 247640
Alignment:
Q  606 cacaaattaatgcatcaaatatagaaataatttattgaaatgtgtgcattatatttaatctttgactttttaatgaatt 684  Q
    |||||||||||| ||||||||||| |||  ||| |||||||||||| |||  ||||||| ||||| ||| |||| ||||    
T  247718 cacaaattaatgaatcaaatatagtaattttttgttgaaatgtgtgtatttaatttaatttttgaatttgtaataaatt 247640  T

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